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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
AT1G14685.3 |
| Common Name | ATBPC2, BBR/BPC2, BPC2, F10B6_22, F10B6.5, T5E21.17 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
BBR-BPC |
| Protein Properties |
Length: 279aa MW: 31168.5 Da PI: 10.2698 |
| Description |
basic pentacysteine 2 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 362.2 | 1e-110 | 1 | 279 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd....maflqrdkalaernkalverdnkllalllven 89
mdddg+ rn+gyyepa a++k nlglqlms+i +r++k+ r+ nl ++++++++++++ m++ +++++ +++k++++l+v++
AT1G14685.3 1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSTI-DRNTKPflpgRDPNL-MMGPNGSYHHQEppihMSY----NWINQ-------QKDKFFNMLPVTT 83
99**99..9*******999**************.9**************.************5555555....*****.......899*******998 PP
GAGA_bind 90 slasalpvgvqvlsgtksidslqq..lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
+ +p++ +vl++t+s+ s+q+ +++ q+e+++v+l+e +i+ + ++kk+k + + +++pk+kk +k+k+++++++++++++ +
AT1G14685.3 84 A----TPNYGNVLPETSSAPSMQMnlHHHLQTEENPVKLEE-------EIV----V-QTKKRKTNAKAGSTPKAKKPRKPKDENSNNNNNNNTNV--T 163
6....9******************64444777777776222.......221....1.22222333567899***********8888877777777..7 PP
GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
r+k kks+dlv+ngvs+D+s+lPvP+C+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekLa++G++++np+
AT1G14685.3 164 RVKPAKKSVDLVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNPI 261
9************************************************************************************************* PP
GAGA_bind 284 DLkdhWAkHGtnkfvtir 301
DLk+hWA+HGtnkfvtir
AT1G14685.3 262 DLKSHWARHGTNKFVTIR 279
*****************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MDDDGFRNWG YYEPAAATFK GNLGLQLMST IDRNTKPFLP GRDPNLMMGP NGSYHHQEPP 60
IHMSYNWINQ QKDKFFNMLP VTTATPNYGN VLPETSSAPS MQMNLHHHLQ TEENPVKLEE 120
EIVVQTKKRK TNAKAGSTPK AKKPRKPKDE NSNNNNNNNT NVTRVKPAKK SVDLVINGVS 180
MDISGLPVPI CTCTGAPQQC YRWGCGGWQS ACCTTNISMH PLPMSTKRRG ARISGRKMSQ 240
GAFKKVLEKL ASDGFNFGNP IDLKSHWARH GTNKFVTIR
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| At.15024 | 0.0 | bud| flower| inflorescence| root| seed| silique |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in pollen grains, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| TAIR | Arabidopsis GBP Basic Penta Cysteine 1 |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC006917 | 0.0 | AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence. |
| GenBank | AC010657 | 0.0 | AC010657.3 Genomic sequence for Arabidopsis thaliana BAC T5E21 from chromosome I, complete sequence. |
| GenBank | AY058073 | 0.0 | AY058073.1 Arabidopsis thaliana At1g14680/F10B6_22 mRNA, complete cds. |
| GenBank | AY090305 | 0.0 | AY090305.1 Arabidopsis thaliana At1g14680/F10B6_22 mRNA, complete cds. |
| GenBank | AY380568 | 0.0 | AY380568.1 Arabidopsis thaliana basic pentacysteine 2 (BPC2) mRNA, complete cds. |
| GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
| Publications
? help Back to Top |
- Santi L, et al.
The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3.
Plant J., 2003. 34(6): p. 813-26
[PMID:12795701] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome.
Science, 2003. 302(5646): p. 842-6
[PMID:14593172] - Meister RJ, et al.
Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter.
Plant J., 2004. 37(3): p. 426-38
[PMID:14731261] - Sottosanto JB,Saranga Y,Blumwald E
Impact of AtNHX1, a vacuolar Na+/H+ antiporter, upon gene expression during short- and long-term salt stress in Arabidopsis thaliana.
BMC Plant Biol., 2007. 7: p. 18
[PMID:17411438] - Wang Y, et al.
Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
Plant Physiol., 2008. 148(3): p. 1201-11
[PMID:18775970] - Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
Plant Methods, 2010. 6: p. 25
[PMID:21108821] - Monfared MM, et al.
Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis.
Plant J., 2011. 66(6): p. 1020-31
[PMID:21435046] - Bruex A, et al.
A gene regulatory network for root epidermis cell differentiation in Arabidopsis.
PLoS Genet., 2012. 8(1): p. e1002446
[PMID:22253603] - Simonini S,Kater MM
Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
J. Exp. Bot., 2014. 65(6): p. 1455-65
[PMID:24482368]
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