PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G14580.1
Common NameIDD6, T5E21.8
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 467aa    MW: 50636.4 Da    PI: 9.4827
Description C2H2-like zinc finger protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G14580.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001184104323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  C+ C+k F r  nL+ H r H
  AT1G14580.1  84 CEVCNKGFQREQNLQLHRRGH 104
                  *******************88 PP
2zf-C2H212.90.00034158180123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H +t+
  AT1G14580.1 158 WKCDKCSKRYAVQSDWKAHSKTC 180
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.7E-681104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.87E-781104No hitNo description
PROSITE profilePS5015710.9782104IPR007087Zinc finger, C2H2
SMARTSM003550.02582104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM00355120123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-5146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.87E-7153178No hitNo description
SMARTSM00355140158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009006anatomyshoot system
PO:0009025anatomyvascular leaf
PO:0009047anatomystem
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSSSYNTIAL SSTPTFLLSS AAAGPGPNNF NRQEAAMTMV QQQPTSSVAP PPKKRRNQPG  60
NPNPDAEVIA LSPKTIMATN RFLCEVCNKG FQREQNLQLH RRGHNLPWKL KQKSNKEVRR  120
KVYLCPEPSC VHHDPARALG DLTGIKKHYY RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC  180
GTKEYRCDCG TIFSRRDSYI THRAFCDALI QESARNPTVS FTAMAAGGGG GARHGFYGGA  240
SSALSHNHFG NNPNSGFTPL AAAGYNLNRS SSDKFEDFVP QATNPNPGPT NFLMQCSPNQ  300
GLLAQNNQSL MNHHGLISLG DNNNNNHNFF NLAYFQDTKN SDQTGVPSLF TNGADNNGPS  360
ALLRGLTSSS SSSVVVNDFG DCDHGNLQGL MNSLAATTDQ QGRSPSLFDL HFANNLSMGG  420
SDRLTLDFLG VNGGIVSTVN GRGGRSGGPP LDAEMKFSHP NHPYGKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34154220369Zinc finger protein JACKDAW
5b3h_F4e-34154220369Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.245190.0flower| leaf| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible260776_at0.0
Expression AtlasAT1G14580-
AtGenExpressAT1G14580-
ATTED-IIAT1G14580-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00142DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G14580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G14580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0910410.0AY091041.1 Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds.
GenBankAY1337660.0AY133766.1 Arabidopsis thaliana clone U18944 putative zinc finger protein (At1g14580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001184994.10.0C2H2-like zinc finger protein
RefseqNP_001320583.10.0C2H2-like zinc finger protein
RefseqNP_172910.20.0C2H2-like zinc finger protein
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A178WBS50.0A0A178WBS5_ARATH; Uncharacterized protein
TrEMBLA0A1P8ANA30.0A0A1P8ANA3_ARATH; C2H2-like zinc finger protein
STRINGAT1G14580.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Representative plantOGRP9516242
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  4. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  5. Colasanti J, et al.
    The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants.
    BMC Genomics, 2006. 7: p. 158
    [PMID:16784536]
  6. Morita MT, et al.
    A C2H2-type zinc finger protein, SGR5, is involved in early events of gravitropism in Arabidopsis inflorescence stems.
    Plant J., 2006. 47(4): p. 619-28
    [PMID:16813575]
  7. Wagner R,Pfannschmidt T
    Eukaryotic transcription factors in plastids--Bioinformatic assessment and implications for the evolution of gene expression machineries in plants.
    Gene, 2006. 381: p. 62-70
    [PMID:16934950]
  8. Reiland S, et al.
    Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.
    Plant Physiol., 2009. 150(2): p. 889-903
    [PMID:19376835]
  9. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  10. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  11. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]