PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G10610.1
Common NameBHLH90, EN50, F20B24.4, F20B24.5, T10O24.26
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 441aa    MW: 50234 Da    PI: 7.0803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G10610.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11267309754
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    Er+RR+riN+a+  Lr ++Pk      +Kl+K+ i   Av+YI++L
  AT1G10610.1 267 HSERKRRERINQAMYGLRAVVPKI-----TKLNKIGIFSDAVDYINEL 309
                  57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-1312159IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.93E-14259322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-10259314No hitNo description
PROSITE profilePS5088814.577260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-12267324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-9267309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MMMMRGGERV KEFLRPFVDS RTWDLCVIWK LGDDPSRFIE WVGCCCSGCY IDKNIKLENS  60
EEGGTGRKKK ASFCRDDHNK HRIRTLACEA LSRFPLFMPL YPGIHGEVVM SKSPKWLVNS  120
GSKMEMFSTR VLVPVSDGLV ELFAFDMRPF DESMVHLIMS RCTTFFEPFP EQRLQFRIIP  180
RAEESMSSGV NLSVEGGGSS SVSNPSSETQ NLFGNYPNAS CVEILREEQT PCLIMNKEKD  240
VVVQNANDSK ANKKLLPTEN FKSKNLHSER KRRERINQAM YGLRAVVPKI TKLNKIGIFS  300
DAVDYINELL VEKQKLEDEL KGINEMECKE IAAEEQSAIA DPEAERVSSK SNKRVKKNEV  360
KIEVHETGER DFLIRVVQEH KQDGFKRLIE AVDLCELEII DVNFTRLDLT VMTVLNVKAN  420
KDGIACGILR DLLLKMMITS I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273ERKRRE
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453353720.0
Genevisible263237_at0.0
Expression AtlasAT1G10610-
AtGenExpressAT1G10610-
ATTED-IIAT1G10610-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G10610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G10610
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293750.0AK229375.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor bHLH090, complete cds, clone: RAFL16-62-E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_172531.20.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLA0A178WLS10.0A0A178WLS1_ARATH; Uncharacterized protein
STRINGAT1G10610.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Representative plantOGRP37041323
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  3. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  4. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  5. Bauer P, et al.
    Analysis of sequence, map position, and gene expression reveals conserved essential genes for iron uptake in Arabidopsis and tomato.
    Plant Physiol., 2004. 136(4): p. 4169-83
    [PMID:15531708]
  6. Zhang W, et al.
    Regulation of Arabidopsis tapetum development and function by DYSFUNCTIONAL TAPETUM1 (DYT1) encoding a putative bHLH transcription factor.
    Development, 2006. 133(16): p. 3085-95
    [PMID:16831835]