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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT1G08465.1 |
| Common Name | T27G7.15, YAB2 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
YABBY |
| Protein Properties |
Length: 184aa MW: 20700.5 Da PI: 9.5578 |
| Description |
YABBY family protein |
| Gene Model |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 262.2 | 7.6e-81 | 1 | 160 | 1 | 170 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98
++v++sse+vCyv+C+fC+tilavsvP++slf++vtvrCGhCt+lls+n+ ++ ++++a ++++l+ ++++++s v+++++as+s+s+
AT1G08465.1 1 MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPP---------IHQDLQPHRQHTTSLVTRKDCASSSRST 89
57899***********************************************999988876.........8*************************** PP
YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
++lsen d+e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl
AT1G08465.1 90 NNLSENIDREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGL 160
**************99.9****************************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0007275 | Biological Process | multicellular organism development |
| GO:0010158 | Biological Process | abaxial cell fate specification |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 184 aa
Download sequence Send
to blast |
MSVDFSSERV CYVHCSFCTT ILAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLHQTSAP 60
PIHQDLQPHR QHTTSLVTRK DCASSSRSTN NLSENIDREA PRMPPIRPPE KRQRVPSAYN 120
RFIKEEIQRI KACNPEISHR EAFSTAAKNW AHFPHIHFGL KLDGNKKGKQ LDQSVAGQKS 180
NGYY
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
| Functional Description ? help
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| Source |
Description |
| TAIR | Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organs |
| UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF136539 | 0.0 | AF136539.1 Arabidopsis thaliana YABBY2 (YABBY2) mRNA, complete cds. |
| GenBank | BT004243 | 0.0 | BT004243.1 Arabidopsis thaliana clone RAFL15-27-O09 (R20923) At1g08465 mRNA, complete sequence. |
| GenBank | DQ108871 | 0.0 | DQ108871.1 Arabidopsis thaliana clone 6413 mRNA sequence. |
| Publications
? help Back to Top |
- Siegfried KR, et al.
Members of the YABBY gene family specify abaxial cell fate in Arabidopsis.
Development, 1999. 126(18): p. 4117-28
[PMID:10457020] - Bowman JL
The YABBY gene family and abaxial cell fate.
Curr. Opin. Plant Biol., 2000. 3(1): p. 17-22
[PMID:10679447] - Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Navarro C, et al.
Molecular and genetic interactions between STYLOSA and GRAMINIFOLIA in the control of Antirrhinum vegetative and reproductive development.
Development, 2004. 131(15): p. 3649-59
[PMID:15229173] - Fourquin C,Vinauger-Douard M,Chambrier P,Berne-Dedieu A,Scutt CP
Functional conservation between CRABS CLAW orthologues from widely diverged angiosperms.
Ann. Bot., 2007. 100(3): p. 651-7
[PMID:17650514] - Klopffleisch K, et al.
Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis.
Mol. Syst. Biol., 2011. 7: p. 532
[PMID:21952135] - Bartholmes C,Hidalgo O,Gleissberg S
Evolution of the YABBY gene family with emphasis on the basal eudicot Eschscholzia californica (Papaveraceae).
Plant Biol (Stuttg), 2012. 14(1): p. 11-23
[PMID:21974722] - Chen GH,Sun JY,Liu M,Liu J,Yang WC
SPOROCYTELESS is a novel embryophyte-specific transcription repressor that interacts with TPL and TCP proteins in Arabidopsis.
J Genet Genomics, 2014. 41(12): p. 617-25
[PMID:25527103] - Sacharowski SP, et al.
SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
Plant Cell, 2015. 27(7): p. 1889-906
[PMID:26106148]
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