PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GATA

Protein Properties

Length: 303aa MW: 33839.1 Da PI: 8.5871

Description

GATA transcription factor 11

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G08010.2	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	63.7	2.1e-20	222	256	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l AT1G08010.2 222 CTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRL 256 *******************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	2.4E-20	216	266	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.8E-15	220	253	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	12.123	220	252	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.38E-15	220	279	No hit	No description
CDD	cd00202	3.09E-17	221	278	No hit	No description
Pfam	PF00320	4.4E-18	222	256	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	222	247	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030154	Biological Process	cell differentiation
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0000977	Molecular Function	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	Molecular Function	RNA polymerase II transcription factor binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	Molecular Function	chromatin binding
GO:0008270	Molecular Function	zinc ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MNWLPEAEAE DDFKGLLSGD FFDDLINHLD VPLDDIDTTN GEGDWVDRFQ DLEPPPMDMF 60 PTLPSDLTSC GSGMAKAPRV DIQRNIPALK QSYSSEALSS TLHQSSAPPE IKVSKLFQSL 120 SPVSVLENSY GSLSTHNNGS QRLAFPVKGM RSKRKRPTTL RLSYLFPSEP RKPEKSTPGK 180 PESECYFSSE QHAKKKRKIH LTTRTVSSTL EASNSDGIVR KCTHCETTKT PQWREGPSGP 240 KTLCNACGVR FRSGRLVPEY RPASSPTFIP AVHSNSHRKI IEMRRKDDEQ FDSSMIRAVI 300 SRG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.22430	0.0	flower\| root\| seed\| silique

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	145335256	0.0
Expression Atlas	AT1G08010	-
AtGenExpress	AT1G08010	-

Functional Description ? help Back to Top
Source	Description
TAIR	Encodes a member of the GATA factor family of zinc finger transcription factors.
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00130	DAP	27203113	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G08010.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G08010

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK229366	0.0	AK229366.1 Arabidopsis thaliana mRNA for putative GATA transcription factor 3, complete cds, clone: RAFL16-61-D15.
GenBank	BT014974	0.0	BT014974.1 Arabidopsis thaliana At1g08010 gene, complete cds.
GenBank	BT015713	0.0	BT015713.1 Arabidopsis thaliana At1g08010 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001077485.1	0.0	GATA transcription factor 11
Refseq	NP_001320942.1	0.0	GATA transcription factor 11
Refseq	NP_172279.1	0.0	GATA transcription factor 11
Swissprot	Q6DBP8	0.0	GAT11_ARATH; GATA transcription factor 11
TrEMBL	A0A384LF57	0.0	A0A384LF57_ARATH; GATA11
TrEMBL	Q0WNS0	0.0	Q0WNS0_ARATH; Putative GATA transcription factor 3
STRING	AT1G08010.1	0.0	(Arabidopsis thaliana)

Link Out ? help Back to Top
Phytozome	AT1G08010.2
Entrez Gene	837316
iHOP	AT1G08010
wikigenes	AT1G08010

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Jeong MJ,Jeong MJ,Shih MC Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. Biochem. Biophys. Res. Commun., 2003. 300(2): p. 555-62 [PMID:12504119] Reyes JC,Muro-Pastor MI,Florencio FJ The GATA family of transcription factors in Arabidopsis and rice. Plant Physiol., 2004. 134(4): p. 1718-32 [PMID:15084732] Bi YM, et al. Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity. Plant J., 2005. 44(4): p. 680-92 [PMID:16262716] Manfield IW,Devlin PF,Jen CH,Westhead DR,Gilmartin PM Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. Plant Physiol., 2007. 143(2): p. 941-58 [PMID:17208962] Taji T, et al. Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila. BMC Plant Biol., 2008. 8: p. 115 [PMID:19014467]