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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AT1G07540.1 |
| Common Name | F22G5.8, TRFL2, TRP5 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family |
MYB_related |
| Protein Properties |
Length: 630aa MW: 70185.9 Da PI: 9.8501 |
| Description |
TRF-like 2 |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 528 | 577 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++
AT1G07540.1 528 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 577
6789999*******************9988889**************986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0031627 | Biological Process | telomeric loop formation |
| GO:0000783 | Cellular Component | nuclear telomere cap complex |
| GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 630 aa
Download sequence Send
to blast |
MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS 60
SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN NNAERSFFVS EILQKSHEMQ 120
SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL 180
NFEAKLSRNV VGKDEKHIGS GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR 240
STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK 300
KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS 360
FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL VHGKKVRDDS KMLLQTGLSL 420
DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL 480
DSKPSAPNRG KTIYSRALIP VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV 540
QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR 600
VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}. |
| Functional Description ? help
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| Source |
Description |
| TAIR | Arabidopsis thaliana telomere-binding protein, putative (At1g07540) |
| UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding. |
| Phenotype -- Disruption Phenotype ? help
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| Source |
Description |
| UniProt | DISRUPTION PHENOTYPE: No visible phenotype, probably due to redundancy. {ECO:0000269|PubMed:15364931}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY519535 | 0.0 | AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds. |
| Publications
? help Back to Top |
- Karamysheva ZN,Surovtseva YV,Vespa L,Shakirov EV,Shippen DE
A C-terminal Myb extension domain defines a novel family of double-strand telomeric DNA-binding proteins in Arabidopsis.
J. Biol. Chem., 2004. 279(46): p. 47799-807
[PMID:15364931] - Hwang MG,Kim K,Lee WK,Cho MH
AtTBP2 and AtTRP2 in Arabidopsis encode proteins that bind plant telomeric DNA and induce DNA bending in vitro.
Mol. Genet. Genomics, 2005. 273(1): p. 66-75
[PMID:15688221] - Yanhui C, et al.
The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
Plant Mol. Biol., 2006. 60(1): p. 107-24
[PMID:16463103] - Hanada K, et al.
Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
Mol. Biol. Evol., 2011. 28(1): p. 377-82
[PMID:20736450]
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