PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G06910.1
Common NameTRFL7
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 390aa    MW: 44344.3 Da    PI: 5.0126
Description TRF-like 7
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G06910.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.6e-08335380145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 
                      +++W+t E +  +++ +++G + Wk+I  + +   +Rt  ++k++++
      AT1G06910.1 335 KLPWSTAETLAVLKGYEKYGAN-WKRIKDENPvlVRRTNGDIKDKFR 380
                      689*****************99.**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-8327385IPR009057Homeodomain-like
PROSITE profilePS512949.64330387IPR017930Myb domain
SuperFamilySSF466899.79E-7332382IPR009057Homeodomain-like
SMARTSM007175.3E-4334385IPR001005SANT/Myb domain
CDDcd116607.22E-11337379No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000005anatomycultured plant cell
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MALSQWKEAI LEGIFMEIED GIVEEKNLER LENLVEILHK EGSKVPKSVT EAYCKVAVEC  60
TVKCLAYEKD AKKAYTEAIK TIWLGRIMPL CDKVSCLVTL DLLKCCRRLW KAHTDDKACK  120
TLMDEDTRDK ALVCLRKVVL DLNPNLVLEN LNMDESDEIE SSEESEETES MVEAREGVGN  180
QNSQASEAME EDDQESLLDT ELERPTSGGS KAVYVPSQFN PIPSAVVDRA LRKLRASKIE  240
LMKALEKGRP SNLNNETITE QENDVANPSA TNAAPRPSLM EPRSTAHTYE WNDSIDDSDG  300
EMGDDIERIN KSKRKRIVVS PLKRNRCSEG ARRPKLPWST AETLAVLKGY EKYGANWKRI  360
KDENPVLVRR TNGDIKDKFR VEMRREERRH
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453612250.0
Expression AtlasAT1G06910-
AtGenExpressAT1G06910-
Functional Description ? help Back to Top
Source Description
TAIRArabidopsis thaliana myb family transcription factor (At1g06910)
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G06910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Regulation -- Hormone ? help Back to Top
Source Hormone
AHDjasmonic acid, salicylic acid
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G06910
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195340.0AY519534.1 Arabidopsis thaliana MYB transcription factor (At1g06910) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_683280.10.0TRF-like 7
TrEMBLA0A178W4860.0A0A178W486_ARATH; TRFL7
TrEMBLQ6R0E40.0Q6R0E4_ARATH; MYB transcription factor
STRINGAT1G06910.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149101111
Representative plantOGRP15031424
Publications ? help Back to Top
  1. Karamysheva ZN,Surovtseva YV,Vespa L,Shakirov EV,Shippen DE
    A C-terminal Myb extension domain defines a novel family of double-strand telomeric DNA-binding proteins in Arabidopsis.
    J. Biol. Chem., 2004. 279(46): p. 47799-807
    [PMID:15364931]
  2. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]