PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G05710.5 | ||||||||
Common Name | bHLH-alpha | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 149aa MW: 16610.9 Da PI: 6.7858 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.7 | 0.00011 | 37 | 76 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R d++ ++++ L++++ + +K + a++L A++YI L AT1G05710.5 37 KERKDKVGERISALQQIVSPY-----GKTDTASVLLDAMHYIEFL 76 67889999***********99.....9***************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.0E-8 | 27 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.518 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.24E-10 | 35 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.56E-4 | 37 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEFSRDAGMM MENKRNVCSL GESSIKRHKS DLSFSSKERK DKVGERISAL QQIVSPYGKT 60 DTASVLLDAM HYIEFLHEQV KVLSAPYLQT VPDATQEELE QYSLRNRGLC LVPMENTVGV 120 AQSNGADIWA PVKTPLSPAF SVTSQSPFR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.72027 | 0.0 | inflorescence| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 263179_at | 0.0 | ||||
Expression Atlas | AT1G05710 | - | ||||
AtGenExpress | AT1G05710 | - | ||||
ATTED-II | AT1G05710 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G05710.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | ethylene |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G03040, AT1G54060, AT1G69690 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G05710 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ576040 | 0.0 | AJ576040.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-alpha gene). | |||
GenBank | AK230257 | 0.0 | AK230257.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-23-B19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001184916.1 | 1e-109 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_001322941.1 | 1e-109 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_001322943.1 | 1e-109 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_001322944.1 | 1e-109 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_563746.1 | 1e-109 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_973764.1 | 1e-109 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_973765.1 | 1e-109 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q7XJU2 | 1e-110 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A178W7Z9 | 1e-108 | A0A178W7Z9_ARATH; Uncharacterized protein | ||||
STRING | XP_010475285.1 | 1e-108 | (Camelina sativa) |
Link Out ? help Back to Top | |
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Phytozome | AT1G05710.5 |
Entrez Gene | 837078 |
iHOP | AT1G05710 |
wikigenes | AT1G05710 |