PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 281aa MW: 32202.6 Da PI: 4.353

Description

NAC domain containing protein 6

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G03490.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	49.1	1.9e-15	4	104	1	97
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWkatgkd 89 lp+G rF Ptd lv yL++kve+++ ++ i+++di++ Pw Lp+ v++ +++ewy+F++ ++ + +r+ + g+W++ + AT1G03490.1 4 LPVGSRFCPTDLGLVRLYLRNKVERNQSSF---ITTMDIHQDYPWLLPH-VNNplfNNNEWYYFVPLTERGGKILSVHRKvaarggSEGGTWRSNDGK 97 799*********************9666...9**********4.333355889***999998766666643444446699**9999 PP NAM 90 kevlskkg 97 ke+++ + AT1G03490.1 98 KEIKDG-H 104 999984.3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-22	4	128	IPR003441	NAC domain
PROSITE profile	PS51005	20.821	4	156	IPR003441	NAC domain
Pfam	PF02365	5.7E-9	5	103	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007275	Biological Process	multicellular organism development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000005	anatomy	cultured plant cell

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MKILPVGSRF CPTDLGLVRL YLRNKVERNQ SSFITTMDIH QDYPWLLPHV NNPLFNNNEW 60 YYFVPLTERG GKILSVHRKV AARGGSEGGT WRSNDGKKEI KDGHMQKGDG LRASDDLQKV 120 VLCRIRYKKE ANVNEFGLVN HQAHQTQDAL TGFADQLEMM LEGQEDREQK EEADLTGFAD 180 SLETMLEGQE DHEQPEDADL TGFADSLETM LEGHEDREQP EEAELTVTQQ QQQQQQQQQR 240 QEDCDVTQEQ EKDDVMVLIN NPNDALALGN YEIIDLTRVD K

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	145335033	0.0
Genevisible	264829_at	1e-128
Expression Atlas	AT1G03490	-
AtGenExpress	AT1G03490	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G03490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G03490

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002560	0.0	AC002560.2 Genomic sequence for Arabidopsis thaliana BAC F21B7 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_171848.3	0.0	NAC domain containing protein 6
Swissprot	Q9LR74	0.0	NAC6_ARATH; NAC domain-containing protein 6
TrEMBL	A0A178W8A0	1e-155	A0A178W8A0_ARATH; NAC006
STRING	AT1G03490.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14026	9	19

Link Out ? help Back to Top
Phytozome	AT1G03490.1
Entrez Gene	839487
iHOP	AT1G03490
wikigenes	AT1G03490

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Ooka H, et al. Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DNA Res., 2003. 10(6): p. 239-47 [PMID:15029955] Maor R, et al. Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants. Mol. Cell Proteomics, 2007. 6(4): p. 601-10 [PMID:17272265]