PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G01350.1
Common NameF6F3.14
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 343aa    MW: 38710 Da    PI: 7.06
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G01350.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-12201226126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y   +C+++ +tG+C yGd+CkF H+
  AT1G01350.1 201 YQPDICKDYKETGYCGYGDSCKFLHD 226
                  67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9199232IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8200227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009200228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-13201231IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9201226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.2E-13262318IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.4E-8276318No hitNo description
SuperFamilySSF578502.39E-13276319No hitNo description
SMARTSM001849.2E-5277314IPR001841Zinc finger, RING-type
CDDcd001625.36E-9277318No hitNo description
PROSITE profilePS5008910.63277315IPR001841Zinc finger, RING-type
PROSITE patternPS005180292301IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034247Biological ProcesssnoRNA splicing
GO:0045292Biological ProcessmRNA cis splicing, via spliceosome
GO:0005684Cellular ComponentU2-type spliceosomal complex
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSDSGEPKPS QQEEPLPQPA AQETQSQQVC TFFKKPTKSK NIRKRTIDAD EEDGDSKSES  60
SILQNLKKVA KPDSKLYFSS GPSKSSTTTS GAPERSVFHY DSSKEIQVQN DSGATATLET  120
ETDFNQDARA IRERVLKKAD EALKGNKKKA SDEKLYKGIH GYTDHKAGFR REQTISSEKA  180
GGSHGPLRAS AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFLHDRGDY KPGWQIEKEW  240
EEAEKVRKRN KAMGVEDEDD EADKDSDEDE NALPFACFIC REPFVDPVVT KCKHYFCEHC  300
ALKHHTKNKK CFVCNQPTMG IFNAAHEIKK RMAEERSKAE QGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M8e-682834213327RING finger protein 113A
5z58_M8e-682834213327RING finger protein 113A
6ff4_t8e-682834213327RING finger protein 113A
6ff7_t8e-682834213327RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.481420.0flower| leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1864780100.0
Genevisible250736_s_at0.0
Expression AtlasAT1G01350-
AtGenExpressAT1G01350-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G01350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G01350
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934190.0AB493419.1 Arabidopsis thaliana At1g01350 mRNA for hypothetical protein, partial cds, clone: RAAt1g01350.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171642.20.0Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLC0SUR60.0C0SUR6_ARATH; Uncharacterized protein At1g01350 (Fragment)
STRINGAT1G01350.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Representative plantOGRP58961720
Publications ? help Back to Top
  1. Seki M, et al.
    Functional annotation of a full-length Arabidopsis cDNA collection.
    Science, 2002. 296(5565): p. 141-5
    [PMID:11910074]
  2. Kosarev P,Mayer KF,Hardtke CS
    Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome.
    Genome Biol., 2002. 3(4): p. RESEARCH0016
    [PMID:11983057]
  3. Holm M,Ma LG,Qu LJ,Deng XW
    Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis.
    Genes Dev., 2002. 16(10): p. 1247-59
    [PMID:12023303]
  4. Lintala M, et al.
    Structural and functional characterization of ferredoxin-NADP+-oxidoreductase using knock-out mutants of Arabidopsis.
    Plant J., 2007. 49(6): p. 1041-52
    [PMID:17335513]
  5. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  6. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  7. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]