PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01040864.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 597aa    MW: 66459.9 Da    PI: 6.6992
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01040864.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1072.3e-3378054128
                    NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            ++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl
  AMDW01040864.1_FGP001   7 KDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-QRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 80 
                            5669*************************************.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.7341103IPR003441NAC domain
SuperFamilySSF1019411.2E-386103IPR003441NAC domain
PfamPF023653.4E-161180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
KSFLPSKDLE WYFFSPRDRK YPNGSRTNRA TKAGYWKATG KDRKVNSQRR AVGMKKTLVY  60
YRGRAPHGSR TDWVMHEYRL DERECETDTG LQDAYALCRV FKKTAPGPKI IEHYGVVHHH  120
VEQPQWMTSS IDRSPTLDVS CDGRGDDFES SSFSFPTETP MDSMHGGFGM QMNAPHEDGK  180
WMQFLNEDAF NATNPFLTNP VSANFSCLPS KVDVALECAR LQHRLTLPPL EVEDFPQDVS  240
LDTKTGILRS NPNEVDILQE FLSVATASQE LINGSTSSYP EMWLGASTSS ASYVNELSSL  300
VEMGGVGTSN HHESARLQVE ITDMEVFKDD KKRVENLRGV KLVNNDLGEI VVEGDESNPT  360
EDIIAQYPIK VTADNSGEAG HRMTDPTDVG GIDTAPIFSQ SQPDDFAAGF DDVNPNASFD  420
LYEKVDVNHG LFVSRVAAAK TFFHRIEPSK KVSFHSNPAA TAVSKATEKF HFPVTTKVSG  480
RVSIFSKFKA LIRDKFLMMR PSHSYQRLGS KETTVSELLQ IMSLLLAPKQ TNGCPTEQEL  540
VKKKAKEVMK PGWGREGSNK LWLPLSKGKG ISSMFLSGKW TFLASALAIS TPAECDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-33410962171NO APICAL MERISTEM PROTEIN
1ut4_B6e-33410962171NO APICAL MERISTEM PROTEIN
1ut7_A6e-33410962171NO APICAL MERISTEM PROTEIN
1ut7_B6e-33410962171NO APICAL MERISTEM PROTEIN
4dul_A6e-33410962171NAC domain-containing protein 19
4dul_B6e-33410962171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAMDW01040864.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2658210.0AB265821.1 Oryza sativa Japonica Group RIM1 mRNA for NAC protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628513.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628514.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628515.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628518.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_015628520.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879975.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879976.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879977.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879978.10.0NAC domain-containing protein 45 isoform X1
RefseqXP_025879979.10.0NAC domain-containing protein 45 isoform X1
TrEMBLA0A0D9Z1A90.0A0A0D9Z1A9_9ORYZ; Uncharacterized protein
STRINGOGLUM03G01540.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.19e-87NAC domain containing protein 28