PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AMDW01037255.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 141aa MW: 15929.8 Da PI: 6.1089 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.1 | 1.6e-19 | 60 | 141 | 2 | 88 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY++YA+++GF v k+ skk+ ++g++ t+ Cs++gk++ ++++ + +++++tr +C ak++ ++ d+k+++++l l+HnH+ AMDW01037255.1_FGP001 60 FYKSYARKLGFGVIKRGSKKT-KDGKVRYFTLACSRQGKAQYTSTN---KFKPNPSTRQQCPAKVNFYLH-DEKFCISTLTLDHNHA 141 9***************99998.7888****************9888...99******************9.9**************5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-16 | 60 | 141 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 141 aa Download sequence Send to blast |
VMDTNLCSDD EQEDHIISEE DDFAVEEVES DSNALVADKT KLLEPAKGML FDSEDSATCF 60 YKSYARKLGF GVIKRGSKKT KDGKVRYFTL ACSRQGKAQY TSTNKFKPNP STRQQCPAKV 120 NFYLHDEKFC ISTLTLDHNH A |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 73 | 81 | KRGSKKTKD |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AMDW01037255.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC136998 | 0.0 | AC136998.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0082P17, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171727.1 | 1e-43 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171728.1 | 1e-43 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171729.1 | 1e-43 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171730.1 | 1e-43 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171731.1 | 1e-43 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171732.1 | 1e-43 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
Refseq | XP_020171733.1 | 1e-43 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
Refseq | XP_020171734.1 | 1e-43 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
Refseq | XP_020171735.1 | 1e-43 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
TrEMBL | J3LBW7 | 3e-78 | J3LBW7_ORYBR; Uncharacterized protein | ||||
STRING | OB02G21340.1 | 6e-79 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43280.1 | 4e-16 | FAR1 family protein |