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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01037147.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 158aa MW: 17285.7 Da PI: 6.7986 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 176.9 | 1.5e-54 | 13 | 153 | 76 | 227 |
GRAS 76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163 +++aa+++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+ s e+le+tg+ AMDW01037147.1_FGP001 13 RVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGK 96 567899********************************************************************....********** PP GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdev 227 rL++fA++lg+pfef + va++ +l++e+L v ++Ea+aV++ h+l+d ++s ++ + AMDW01037147.1_FGP001 97 RLSDFADTLGLPFEFCP-VADKAGNLDPEKLGVTRREAVAVHWLR--HSLYDVTGSDSN----T 153 *****************.7************************98..888877777766....4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 31.89 | 1 | 158 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.1E-52 | 13 | 153 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
PSPSPAGARV HGRVAAAFQV FNGISPFVKF SHFTANQAIQ EAFEREERVH IIDLDIMQGL 60 QWPGLFHILA SRPGGPPRVR LTGLGASMEA LEATGKRLSD FADTLGLPFE FCPVADKAGN 120 LDPEKLGVTR REAVAVHWLR HSLYDVTGSD SNTLWLIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-89 | 13 | 158 | 94 | 239 | Protein SCARECROW |
5b3h_A | 6e-89 | 13 | 158 | 93 | 238 | Protein SCARECROW |
5b3h_D | 6e-89 | 13 | 158 | 93 | 238 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000250}. | |||||
UniProt | Probable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000269|PubMed:12974810}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01037147.1_FGP001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243131 | 0.0 | AK243131.1 Oryza sativa Japonica Group cDNA, clone: J100030A12, full insert sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | BX000506 | 0.0 | BX000506.4 Oryza sativa chromosome 12, . BAC OJ1311_G04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620600.1 | 1e-109 | protein SCARECROW 2 | ||||
Swissprot | A2ZHL0 | 1e-110 | SCR2_ORYSI; Protein SCARECROW 2 | ||||
Swissprot | Q2QYF3 | 1e-110 | SCR2_ORYSJ; Protein SCARECROW 2 | ||||
TrEMBL | I1R3J7 | 1e-110 | I1R3J7_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA12G0010300.1 | 1e-111 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 2e-86 | GRAS family protein |