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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01036740.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 44aa MW: 5131.94 Da PI: 10.68 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.9 | 2e-14 | 1 | 40 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rRR+riN+++ L++l+P++ K +Ka++L A+eY+k+Lq AMDW01036740.1_FGP001 1 RRRSRINEKMKALQSLVPNS-----SKTDKASMLDDAIEYLKQLQ 40 8******************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-15 | 1 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-15 | 1 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-8 | 1 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-12 | 1 | 40 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.63E-9 | 1 | 44 | No hit | No description |
PROSITE profile | PS50888 | 15.885 | 1 | 39 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 44 aa Download sequence Send to blast |
RRRSRINEKM KALQSLVPNS SKTDKASMLD DAIEYLKQLQ LQVQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01036740.1_FGP001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360656 | 3e-35 | AK360656.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122L11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235938.1 | 3e-21 | transcription factor SPATULA isoform X3 | ||||
Refseq | XP_015627242.1 | 2e-21 | transcription factor SPATULA isoform X1 | ||||
Refseq | XP_015627243.1 | 2e-21 | transcription factor SPATULA isoform X1 | ||||
Refseq | XP_015627244.1 | 2e-21 | transcription factor SPATULA isoform X2 | ||||
Refseq | XP_022682068.1 | 2e-21 | transcription factor SPATULA isoform X2 | ||||
Swissprot | Q9FUA4 | 4e-21 | SPT_ARATH; Transcription factor SPATULA | ||||
TrEMBL | Q6K844 | 1e-21 | Q6K844_ORYSJ; Uncharacterized protein OJ1548_F12.19 | ||||
STRING | Pavir.Ab03239.1.p | 3e-22 | (Panicum virgatum) | ||||
STRING | OS02T0805250-00 | 7e-21 | (Oryza sativa) | ||||
STRING | ORGLA02G0316800.1 | 7e-21 | (Oryza glaberrima) | ||||
STRING | LPERR02G30060.1 | 7e-21 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 2e-23 | bHLH family protein |