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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01035649.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 85aa MW: 9781.26 Da PI: 10.235 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.1 | 1.6e-09 | 38 | 82 | 1 | 46 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46 +fYn YA + GF +r +k + + ++++ t+r+ +Cs +g++ ++kk AMDW01035649.1_FGP001 38 NFYNVYAVSKGFGIRLDKDRMN-TKKQRTMRQICCSHQGRNPKTKK 82 6****************99998.5555999**********999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-6 | 38 | 82 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MVVDNVDSSA VIPPEYADPQ ILTPMLGQRF KTERDAYNFY NVYAVSKGFG IRLDKDRMNT 60 KKQRTMRQIC CSHQGRNPKT KKPSV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01035649.1_FGP001 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135421 | 1e-121 | AC135421.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0012G21, complete sequence. | |||
GenBank | AL606455 | 1e-121 | AL606455.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02, complete sequence. | |||
GenBank | AL731607 | 1e-121 | AL731607.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18, complete sequence. | |||
GenBank | AP014960 | 1e-121 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | AP014961 | 1e-121 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880974.1 | 2e-58 | uncharacterized protein LOC112938787 | ||||
Refseq | XP_025881544.1 | 9e-54 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0P0WFM7 | 7e-56 | A0A0P0WFM7_ORYSJ; Os04g0641500 protein | ||||
TrEMBL | Q7X753 | 1e-52 | Q7X753_ORYSJ; OSJNBa0063C18.5 protein | ||||
STRING | OS04T0354200-00 | 1e-52 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15940 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 6e-08 | FAR1 family protein |