PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AMDW01034480.1_FGP001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 100aa MW: 11306.6 Da PI: 4.2159 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 24.2 | 1.1e-07 | 65 | 100 | 2 | 38 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCske 38 fYn YA+ +GF +r+sk++++ + g +++f+C +e AMDW01034480.1_FGP001 65 FYNLYARFTGFGIRRSKNRYK-DGGVKSMQEFCCIRE 100 9***************99987.889999******986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MEEEGWPEKG GEDHSGQPMD VVPLERIVVE GEEDSDLLPI SLSDPAILLP KIGQTFNEDS 60 DGYAFYNLYA RFTGFGIRRS KNRYKDGGVK SMQEFCCIRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AMDW01034480.1_FGP001 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC107226 | 1e-122 | AC107226.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0081P02, complete sequence. | |||
GenBank | AP004792 | 1e-122 | AP004792.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0505A04. | |||
GenBank | AP007205 | 1e-122 | AP007205.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0048L03. | |||
GenBank | AP014959 | 1e-122 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | AP014962 | 1e-122 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q10PQ2 | 5e-64 | Q10PQ2_ORYSJ; Transposon protein, putative, unclassified |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15940 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 4e-07 | FAR1-related sequence 10 |