PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_022283-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 256aa    MW: 28718.6 Da    PI: 8.3372
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_022283-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001397119223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C+ C+k ++++ +L  H +  H
  AHYPO_022283-RA  97 SCSVCHKAYPTQRLLSIHVSEvH 119
                      6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.76994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM003550.9696119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003554.6134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAMITEGGGS KGESEFPSWK CVRRMFSPDS PFFTSGDVER QILAKQVALE LSEDEKQQLV  60
DMEDCGREIL CPIAGCGARL TSLEGFEDHY NGSHTASCSV CHKAYPTQRL LSIHVSEVHD  120
SYFKAKVARG YPMYECLVET CGLKFKSYKG RHQHLVDKHK FPSTFEFHKK VHLSKKQRQK  180
HSHKQAVCKD EDSNLMPVDD DTMEGLTSAI SRLSTSDSVP SSISFGRRHN RGLAFVPRSV  240
QRERRPGFLP STMNG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021727485.11e-148zinc finger protein 511-like isoform X1
RefseqXP_021727486.11e-148zinc finger protein 511-like isoform X1
TrEMBLA0A0K9QAW41e-142A0A0K9QAW4_SPIOL; Uncharacterized protein
STRINGXP_006470078.11e-122(Citrus sinensis)
STRINGXP_006447049.11e-122(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.13e-99zinc ion binding;nucleic acid binding;zinc ion binding