PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_019504-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 350aa    MW: 39099.5 Da    PI: 7.4706
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_019504-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.91.5e-3140143198
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                      f+kv tpsdv+k++rlv+pk++ae++    + ++e++  l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  
  AHYPO_019504-RA  40 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSTINEKGLLLNFEDRTGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGQiG 133
                      89***************************966667899*************************************************6557778 PP

                      EE..EEEEE- CS
               B3  89 efelvvkvfr 98 
                      + +l++ +++
  AHYPO_019504-RA 134 KDKLFIDWRK 143
                      8888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-4035142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-2937128IPR015300DNA-binding pseudobarrel domain
CDDcd100174.70E-2638127No hitNo description
SMARTSM010196.2E-2140145IPR003340B3 DNA binding domain
PROSITE profilePS5086314.28340145IPR003340B3 DNA binding domain
PfamPF023627.5E-2940143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDCTSSSYNL PYKAMSTPIS DQVIDEGEGG KIVMEREHMF DKVVTPSDVG KLNRLVIPKQ  60
HAEKYFPLDS TINEKGLLLN FEDRTGKQWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG  120
DIVSFQRGVG QIGKDKLFID WRKRFDGSSF VLRSHHPHLQ PLNHPYPAWA QSHPFQRDAA  180
AAGGTGFRSQ YGFGFGTVVN PYPDVNGSVI FVRSSSSYPS VIGNHIQQPQ EQQNYVSISS  240
SSSGERGLLT SMQVQGEECG DEHMVIESVP VVQGKAAAKR LRLFGVNMEC SISNQTHDFD  300
ILSSSTSSNH HDDQHQHNYS KLNSMSFYNG ANTSSDKGKS SSMSLDLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-64331441113B3 domain-containing transcription factor NGA1
5os9_B1e-64331441113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856706.15e-97B3 domain-containing transcription factor NGA3-like
SwissprotO827995e-72NGA1_ARATH; B3 domain-containing transcription factor NGA1
SwissprotQ8LMR96e-72Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0K9RMQ11e-95A0A0K9RMQ1_SPIOL; Uncharacterized protein
STRINGXP_009758550.15e-93(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-73B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  4. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  5. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  6. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  7. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]