PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_017499-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | B3 | ||||||||
Protein Properties | Length: 235aa MW: 26898.5 Da PI: 9.247 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.4 | 7.4e-20 | 130 | 219 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +++s+v+ +l++p++f+++h ++++ +ltl de+g +W+ k+ rk++ l++GW++F +++L +gD ++F+l+++ +l+v AHYPO_017499-RA 130 FIKPMLQSHVTGGFWLSFPNSFCKAHL--PTTDEELTLIDEDGDQWKAKYLARKNG----LSGGWRGFSLDHELVDGDALIFQLIKE--DTLKV 215 89**********************995..345669***************667776....***********************9984..44688 PP EEE- CS B3 95 kvfr 98 ++r AHYPO_017499-RA 216 YIIR 219 8887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-25 | 123 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-22 | 124 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.19E-27 | 128 | 219 | No hit | No description |
PROSITE profile | PS50863 | 13.69 | 130 | 221 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.9E-24 | 130 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-17 | 130 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVTSTISYEE QRKQRLEENK KRMEQLNLHK LSQALKPTPK TNVNPSPVKK LKSRAVDFAV 60 STPPRRSSRT ADKPPPNYKE FGLEPLLAGR RFYKRRDLLN RVYAKDEDRV NAIERAEKLE 120 SHLGSEFPTF IKPMLQSHVT GGFWLSFPNS FCKAHLPTTD EELTLIDEDG DQWKAKYLAR 180 KNGLSGGWRG FSLDHELVDG DALIFQLIKE DTLKVYIIRV NSSDEEGEHK GEEN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021738464.1 | 1e-126 | B3 domain-containing protein At3g19184-like | ||||
Refseq | XP_021738465.1 | 1e-126 | B3 domain-containing protein At3g19184-like | ||||
Swissprot | Q1G3M3 | 2e-81 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A0K9RS36 | 1e-108 | A0A0K9RS36_SPIOL; Uncharacterized protein | ||||
STRING | XP_010691035.1 | 1e-118 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 7e-84 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_017499-RA |
Publications ? help Back to Top | |||
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