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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_017188-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 159aa MW: 18022 Da PI: 7.6258 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.5e-05 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H AHYPO_017188-RA 46 YTCTFCRREFRSAQALGGHMNVH 68 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.65E-6 | 43 | 73 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.1E-4 | 44 | 71 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.157 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0066 | 46 | 68 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.0E-5 | 46 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MLMPNMKNMS FNEEGIVGEE SWELARAFAE DTRNNPRGTN WPPRSYTCTF CRREFRSAQA 60 LGGHMNVHRR DRARLHHQQT NIQAQAQAQV QARYMNVGPT TSSIYYDQFN SIGSHFLPTS 120 RYYSEMQVNE MSNGAEPGWG AIGGGEVIEL ADMARWGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 9e-14 | 41 | 68 | 2 | 29 | superman protein |
2l1o_A | 9e-14 | 41 | 68 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010677249.1 | 1e-38 | PREDICTED: transcriptional regulator SUPERMAN | ||||
STRING | XP_010677249.1 | 4e-38 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 5e-27 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_017188-RA |