PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015911-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 451aa    MW: 50123 Da    PI: 9.8877
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015911-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012219241223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C++Cg+ F  ++nL+ H+ + H
  AHYPO_015911-RA 219 SCSHCGEIFMKPENLELHQAVrH 241
                      8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.808218246IPR007087Zinc finger, C2H2
PROSITE patternPS000280218241IPR007087Zinc finger, C2H2
SuperFamilySSF563999.59E-26243449No hitNo description
Gene3DG3DSA:3.90.228.101.2E-14244448IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAKPTINPRK PTKEIHKTRR SQPPQREQQQ QQPPSSSSSS SSSSWVVMKN ILTCKHMEVQ  60
QQQQPQQQLT KNKQQKQPTN LPIIEDNNNI KSKNKKMRCS GSLCNNTKVM QRPELSSPET  120
HQRKIRRPSI ATSSSSSSHE ESNRSIKSSV LSELSNNSST SNEILQKSCS SNTNSNSSAN  180
YSIKGMPFRR LSGCYECRMV VDPVLSFTRD PSLRATICSC SHCGEIFMKP ENLELHQAVR  240
HAVSELGPED TSKNIVEIIF QSSWLKKQSP VCKIDRILKV QNTQKTVTKF EDYRDSIKFK  300
ATRLPKKHPR CIADGNELLR FHCTTFKCSL GLNGSSNLCN SIPNCNVCSI IKNGFKVVDG  360
GPTGKGILTT ASSGRAHDQA EVGMEENDKR AMLVCRVIAG RVRKSLEGVG SSEEYDSVAG  420
ASGVYSNLDE LYVFNPKAIL PCFVVIYRGF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692561.10.0PREDICTED: uncharacterized protein LOC104905404
TrEMBLA0A0K9QQH80.0A0A0K9QQH8_SPIOL; Uncharacterized protein
STRINGXP_010692561.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-100C2H2-like zinc finger protein