PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_014806-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C2H2

Protein Properties

Length: 475aa MW: 53184 Da PI: 7.8431

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_014806-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	378	400	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ +F++ L +H+++H AHYPO_014806-RA 378 YTCPKCSVTFTSGTRLASHMNLH 400 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.97E-5	375	404	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.6E-4	377	401	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.011	378	405	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0038	378	400	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	380	400	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MPNSTNHPSL NGHRVDASTL ALTSSSLEPK KEHPNDSHDA VDAPLLLNSA STIPSQTQLM 60 PVLGQVVSHH QMDETTTRRS NLTLSFGHHP NSTSNSYPVQ FVNINIIQGS NSFVNVNLLN 120 SQPPSQFTRN DLLESSSNPL PIMNNNYISA SSHFQQPFQT LNSNQSPILD RISETNQSLE 180 FTGYLAQYVS PTVPTVSGTR PNTIDTEYEK NIPTAIPISM THLRPGPTNL SPHQWQSSHP 240 HHRVPSQHHT FPQRASSLNF NQPSRYFPGE NHNHIPHFEC LTLNLSKHQV LTPGGGNGTF 300 PENYHFQPNR STSPESHLAT EQITDQVLEL KYNGTPLPQT ELIQEPPQMH SQNGNRNETS 360 ELDPQDRRYP SIMRHAPYTC PKCSVTFTSG TRLASHMNLH YKDETPAERK KRRERKYQMQ 420 DLCITQSRDG IMTVMPRSCQ QQGETSAAAN ITEKRGNASS QKVRTVPKII KEEK*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MPNSTNHPSL NGHRVDASTL ALTSSSLEPK KEHPNDSHDA VDAPLLLNSA STIPSQTQLM  60
PVLGQVVSHH QMDETTTRRS NLTLSFGHHP NSTSNSYPVQ FVNINIIQGS NSFVNVNLLN  120
SQPPSQFTRN DLLESSSNPL PIMNNNYISA SSHFQQPFQT LNSNQSPILD RISETNQSLE  180
FTGYLAQYVS PTVPTVSGTR PNTIDTEYEK NIPTAIPISM THLRPGPTNL SPHQWQSSHP  240
HHRVPSQHHT FPQRASSLNF NQPSRYFPGE NHNHIPHFEC LTLNLSKHQV LTPGGGNGTF  300
PENYHFQPNR STSPESHLAT EQITDQVLEL KYNGTPLPQT ELIQEPPQMH SQNGNRNETS  360
ELDPQDRRYP SIMRHAPYTC PKCSVTFTSG TRLASHMNLH YKDETPAERK KRRERKYQMQ  420
DLCITQSRDG IMTVMPRSCQ QQGETSAAAN ITEKRGNASS QKVRTVPKII KEEK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	408	414	RKKRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00264	DAP	Transfer from AT2G15740	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G15740.1	5e-10	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	AHYPO_014806-RA