PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012186-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 263aa    MW: 30243 Da    PI: 8.4922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012186-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.4e-06113132120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k+F+r  nL+ H+
  AHYPO_012186-RA 113 FSCHLCNKTFNRYNNLQMHM 132
                      89*****************9 PP
2zf-C2H212.20.00055197219123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C +Cgks   k + ++H +++
  AHYPO_012186-RA 197 FSCRKCGKSLAVKGDWRTHEKNC 219
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.86E-6106135No hitNo description
SMARTSM003550.17113135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4113132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SMARTSM00355100160192IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.25E-5182217No hitNo description
SMARTSM0035599197217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEVIGAFSLS NFSKIELDNK NIEPLKLFPD KTENFFSSRD LDSKKLQLEN EDEEDDDNVA  60
LHIGLPDNNN DYNNDHNVIR KGISDNNEDN EVQKSNNYWI PSAVQILVGF THFSCHLCNK  120
TFNRYNNLQM HMWGHGSQYR KGPESLKGVQ PRAILSVPCY CCEEGCKNNI NHPKSKPLKD  180
FRTLQTHYKR KHGHKPFSCR KCGKSLAVKG DWRTHEKNCG KRWLCLCGSD FKHKRSLKDH  240
IRAFGSGHAP FPPTFDSVHH FN*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676259.11e-138PREDICTED: protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-105TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A1R3K2C91e-116A0A1R3K2C9_9ROSI; Putative TRANSPARENT TESTA 1 protein
STRINGXP_010676259.11e-137(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]