PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_011164-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | B3 | ||||||||
Protein Properties | Length: 175aa MW: 20229.4 Da PI: 9.9717 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.2 | 8.2e-15 | 90 | 170 | 4 | 88 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 + ++s++ + g + lp kf++e++ k e+s + + de+g +W+++l +k++++++++ W++ + ng ++gD +vF+l+++ AHYPO_011164-RA 90 IVVKSYTERWGVMDLPSKFCKENDVK-ENSSGVLMIDERGDTWKLTL--KKHGKKIYIG-KWRHLHRHNGYEVGDLLVFELISSG 170 567899999999***********755.55669***************..******9999.8*******************99743 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.7E-7 | 3 | 60 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-13 | 86 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-14 | 86 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.506 | 87 | 175 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.82E-10 | 87 | 175 | No hit | No description |
SMART | SM01019 | 5.6E-6 | 87 | 175 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-11 | 90 | 171 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MAKKSSCFFQ PLIPGFLSNF SIPRSFHKQL QVQDMQDKNE VVLRAKQGKT WEIKVDHQQG 60 FKRVADIYKA CSESGSNASF KPRGYPYCRI VVKSYTERWG VMDLPSKFCK ENDVKENSSG 120 VLMIDERGDT WKLTLKKHGK KIYIGKWRHL HRHNGYEVGD LLVFELISSG ELPVM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010672239.2 | 1e-36 | PREDICTED: B3 domain-containing protein REM9-like | ||||
STRING | XP_010672239.1 | 3e-38 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 1e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_011164-RA |