PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010074-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 408aa    MW: 45317.4 Da    PI: 7.4691
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010074-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05124144323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C++C+k F++   L  H+r+H
  AHYPO_010074-RA 124 CKYCHKKFRTEKALYGHMRSH 144
                      ********************9 PP
2zf-C2H212.80.00036261283123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+ksF ++  L  H ++H
  AHYPO_010074-RA 261 WVCTTCNKSFATHQALGGHRSSH 283
                      58**************9999998 PP
3zf-C2H214.10.00014331353123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C++ F++   L  H+r+H
  AHYPO_010074-RA 331 HKCKICDQNFPSGQALGGHMRLH 353
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.28E-979144No hitNo description
SMARTSM003551.179101IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.61979106IPR007087Zinc finger, C2H2
PfamPF139129.2E-580103IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM003550.0071122144IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827122154IPR007087Zinc finger, C2H2
PfamPF139123.6E-7123146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.5E-4124144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-5259288No hitNo description
Gene3DG3DSA:3.30.160.600.001260287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.19261283IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.302261288IPR007087Zinc finger, C2H2
PfamPF139122.3E-8262285IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
SuperFamilySSF576678.92E-5330354No hitNo description
PROSITE profilePS501579.307331353IPR007087Zinc finger, C2H2
SMARTSM003550.027331353IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-9331354IPR007087Zinc finger, C2H2
PROSITE patternPS000280333353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MEDPKTDQKL KIRLKYTKPE TKRILTLLQP SSSANFNQEQ ELIIESDLEE GEIRETHESK  60
LEDLTINQQK DHQIEDKKRI CGFCNKVFAN GKALGGHLRI HKKKEKDGPD DLSPKPGPEK  120
EVICKYCHKK FRTEKALYGH MRSHPERPHR GMGPPPPLIW KRKGKRSRPI GERVSTSSSP  180
SSSSFSSGPG RAESLADCLM KMSSNDEDGE DSNNHDYYDE LMKKIRIGKE NKKRKLGHDD  240
DHGDDDDHGD DDDDDEKKGK WVCTTCNKSF ATHQALGGHR SSHNKEKNSV HVKIPNSNSI  300
QTLNLTRIAE NGYGYGSNRT HFKEVEEVVS HKCKICDQNF PSGQALGGHM RLHYVVPCSG  360
SGSGSGSGLG QSSSQTGQGV RGTILDFDLN VAAVAEDVDV AVDSSYL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.12e-15C2H2 family protein