PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009201-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 392aa    MW: 43988.6 Da    PI: 8.3119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009201-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.3e-07220242123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cgk F+r  nL+ H+r H
  AHYPO_009201-RA 220 HYCQVCGKGFKRDANLRMHMRAH 242
                      68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.16E-6218245No hitNo description
PROSITE profilePS5015712.653220247IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-6220250IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034220242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
SMARTSM0035583274307IPR015880Zinc finger, C2H2-like
SMARTSM0035535312334IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MIPGSGPCFP STSDPDDLPN HTDLYHDVME ASFGGAVLGS DTQFRSLLCS LTVLKQKVHE  60
VESLIGLFLS HDTHQQGQPF ANISSLIQEI VVNASSMMFN CQQMTIGSSQ TGHNNRHVQG  120
QSETNPNQFV SCGVSKITAD NTHQGFLDGD HNLFNWYNND SYNSSYMNNI VRAESCSRST  180
VMTTAPNSKA RLKRLSTALM SEPYDLVEPD AADLLAKYTH YCQVCGKGFK RDANLRMHMR  240
AHGDEYKSSA ALTNPLKKEV TNEEKNEIKP PRKYSCPQQG CRWNKNHVKF QPLKSIICVK  300
NHYKRSHCPK MYVCKRCNRK NFSVLSDLRT HEKHCGDRKW QCSCGTTFSR KDKLMGHVAL  360
FVGHNPVNPQ GEADCNIDNQ GTMQIQFQDR G*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667294.11e-180PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT241e-100STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0J8B2Y21e-178A0A0J8B2Y2_BETVU; Uncharacterized protein
STRINGXP_010667294.11e-179(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-100C2H2 family protein