PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009200-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 338aa    MW: 37649.7 Da    PI: 6.4586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009200-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-06211233123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cg+ F+r  nLk H+r H
  AHYPO_009200-RA 211 HCCQVCGRGFKREANLKMHMRAH 233
                      5699*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.24E-5210234No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5211267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0041211233IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.718211238IPR007087Zinc finger, C2H2
PROSITE patternPS000280212233IPR007087Zinc finger, C2H2
SMARTSM00355310263298IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MHRTISDFTS TINHHALHQD IPESSFIRGG GSGGGGGGGV GSESHLIRSL LCNLSILKEK  60
VHDIESFLSI FLAQDQNNNF HPSYNLSVDQ SMAFSNTIHD IVETASDMRL SFQQIIFESN  120
YDHSVDLQSL VHDNGLLEFN DGHVINKGTE QGFYDGDWYL QNPTNFYNNN TNTNNVPETS  180
TSPTTSTTME ASQNYEVVEL EAADLLARYT HCCQVCGRGF KREANLKMHM RAHGNHYKTS  240
LISNNISNNE ENNKSKNMGL KKYSCPQEGC RWNKKHSKFQ PLKSIFSVLS DLKTHEKHCG  300
DVKWNCSCGS TFSKKDKLMD HWAGGFDSDV EGVIGAP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021766386.19e-81protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-58C2H2 family protein