PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_008062-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 613aa    MW: 70501.4 Da    PI: 4.7771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_008062-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05583603222
                      EETTTTEEESSHHHHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                      +C++Cg+ F ++s L++H++ 
  AHYPO_008062-RA 583 VCEKCGEEFESRSKLHKHLSE 603
                      6*****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.4E-23584IPR001623DnaJ domain
SuperFamilySSF465653.01E-237105IPR001623DnaJ domain
SMARTSM002715.3E-22971IPR001623DnaJ domain
CDDcd062575.52E-161068IPR001623DnaJ domain
PROSITE profilePS5007619.2921079IPR001623DnaJ domain
PfamPF002262.8E-201176IPR001623DnaJ domain
PRINTSPR006252.3E-151230IPR001623DnaJ domain
PRINTSPR006252.3E-153045IPR001623DnaJ domain
PRINTSPR006252.3E-155171IPR001623DnaJ domain
PROSITE patternPS0063605675IPR018253DnaJ domain, conserved site
PRINTSPR006252.3E-157190IPR001623DnaJ domain
SuperFamilySSF576672.92E-14287336No hitNo description
SMARTSM004513.4E-4293327IPR003604Zinc finger, U1-type
PfamPF121712.5E-10296321IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003553.3296320IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099296325IPR007087Zinc finger, C2H2
PROSITE patternPS000280298320IPR007087Zinc finger, C2H2
SMARTSM003554.2582606IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972582611IPR007087Zinc finger, C2H2
PROSITE patternPS000280584606IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MADTEREKRC YYEVLGLPQS CTQDEIRSAY KKLALQRHPD KLVQSGITSA DANASFQELV  60
RAYEVLSDPK ERSWYDSHRS QILFSSTSGG NSDSPFPDLF SYFSPTCYTD YTNPKTGFYK  120
VYGDVFDKIY AHEINYCKVI GLSLALVKEA PLFGDLGSDY SQVNAFYGYW LGFCTVMDFG  180
WVDKWDAAGG VNRKSRRVME EENKKLRKKA KREFNETVRG LVEFVKKRDK RVIDMMVKKE  240
KERQKKQEEE LAKRKERERQ KMERARMYEE PDWAKVEEVE DFAEEEEQGE EEREEFYCVA  300
CGKKFKSDKQ WKNHEQSKKH KEKVAQLRKS FVEEDIYEDV EEEDIDGKFQ YQDEDAKQVD  360
GNNADDDVSG NGFVPVEDVE DVEDDADGLV EEFKESIGFE EERSRYELLS DDDDVIGNDK  420
KVNGIEESAT GSEEESTAGF ENDSIFLETL ISNRWNNANV TINDESFENN NALSEDDAEP  480
MEYNNKKGKK KSRRAKKEKG KASEAEATRA NYVQVEENNI DASNAPNNGE DDRAYHTQAS  540
SSTTKAEKQS FGRKGNVKQD TESKSKNSKG RKQKDKLKNR EPVCEKCGEE FESRSKLHKH  600
LSESGHASLK SR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1485493KKGKKKSRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733971.10.0DNAJ protein JJJ1 homolog
TrEMBLA0A0K9RKE20.0A0A0K9RKE2_SPIOL; Uncharacterized protein
STRINGXP_010695209.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-129DNAJ heat shock N-terminal domain-containing protein