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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_006458-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 207aa MW: 23223.6 Da PI: 8.3581 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00017 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H AHYPO_006458-RA 56 FECQYCYKEFANSQALGGHQNAH 78 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.12E-6 | 52 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 52 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 5.5E-6 | 56 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.51 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
LDPNKSHIEG EESTNSSNTI SSNNTNSSCK TINNKEKNDF NLCNNNNNIE VEQKKFECQY 60 CYKEFANSQA LGGHQNAHKK ERMKKKRLQL QARRASINFY LQPYHQSLKN TSSSGNSLWY 120 FDPSYYAPAD QFGVYEESQI SFGPFDQDHI NQTAAFQQFT LTHAGKCSSQ SRPVIVKPQG 180 SSSGVAKQNC KSIDLQLGLS LDSNFI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin (GA). Acts upstream of GIS, GIS2, ZFP8 and the trichome initiation regulators GL1 and GL3 (PubMed:21803862, PubMed:22301962). Binds the promoter region of ZFP8, which may be a direct target of ZPF5 (PubMed:21803862). Is not involved in the regulation of trichome branching (PubMed:22301962). Modulates root hair initiation and elongation in response to cytokinin and ethylene signals by directly promoting expression of the CAPRICE (CPC) gene (PubMed:22762888). {ECO:0000269|PubMed:21803862, ECO:0000269|PubMed:22301962, ECO:0000269|PubMed:22762888}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin and ethylene. {ECO:0000269|PubMed:22762888}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010682396.1 | 1e-77 | PREDICTED: zinc finger protein 5 | ||||
Swissprot | Q39264 | 4e-19 | ZFP5_ARATH; Zinc finger protein 5 | ||||
TrEMBL | A0A438EHX0 | 4e-55 | A0A438EHX0_VITVI; Zinc finger protein 5 | ||||
STRING | XP_010682396.1 | 4e-77 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10480.1 | 1e-20 | zinc finger protein 5 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_006458-RA |
Publications ? help Back to Top | |||
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