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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_005668-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | B3 | ||||||||
Protein Properties | Length: 209aa MW: 23935.8 Da PI: 4.7305 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 86.7 | 1.9e-27 | 41 | 124 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+ltpsdv+k++rlv+pk++a ++ ++ + +l+++d+ + W+++++y+k+s+++v+t+GW++Fv+ +gL+++D+v+F++ AHYPO_005668-RA 41 FRKELTPSDVGKLNRLVIPKRYALKYFPIQDHDLELVFYDQGMKNWKFRYCYWKSSQSFVFTRGWNKFVRVKGLEAKDIVTFYM 124 89************************666667889***********************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.3E-32 | 38 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.99E-26 | 40 | 124 | No hit | No description |
SuperFamily | SSF101936 | 5.36E-27 | 40 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.3E-25 | 41 | 125 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.802 | 41 | 149 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-20 | 41 | 133 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MIKDGSYQIK FGEYLGSITQ VQNGVTCDQK KQDGLVCQEL FRKELTPSDV GKLNRLVIPK 60 RYALKYFPIQ DHDLELVFYD QGMKNWKFRY CYWKSSQSFV FTRGWNKFVR VKGLEAKDIV 120 TFYMCELKGD KSDGNENNQF WMIDVVKGGD CDGRDRHEEE EEEGDEEEGS SSSVNEGEET 180 DSASAKGFRL FGVEIVPLHV NVSMDSVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-27 | 37 | 122 | 10 | 100 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010676971.1 | 9e-82 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
Swissprot | Q9C6P5 | 2e-49 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | A0A0K9RYJ9 | 2e-75 | A0A0K9RYJ9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010676971.1 | 3e-81 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 1e-48 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_005668-RA |