PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_004006-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 367aa    MW: 42202.8 Da    PI: 4.4339
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_004006-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.2e-131094195
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     ffkv+     ++s  l++p  fae+ +g+   +  + l+    ++W v++   k ++r ++l+ GW++Fv++n ++ gDf+vF+++++++f   v+
  AHYPO_004006-RA 10 FFKVF--QPQFSSESLMIPPAFAEKVSGD--LPNRVFLKG--YKVWLVNV--GKIGDRlHFLG-GWSKFVSENFIEHGDFMVFEYHSKRCF--DVT 94
                     88999..77888888***********877..566788766..79******..99999945555.********************9988888..444 PP
2B338.61.9e-12270352590
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 
                       ++sd+  ++rl +p +f+ + ++k   + +++l+d++gr W  + +  ++ g++++++GW + ++ang+ e D+++ +l  ++ ++
  AHYPO_004006-RA 270 IVKSDYD-RDRLHIPTTFMVDSKLK--FEDEIVLQDPEGRNWGGNRN-LRQNGSVWIQGGWTNLCDANGVTEDDTLICELLpQKGKT 352
                      4555555.567********999988..5559***********99985.4555689**********************9976332333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-186101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.744899IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-188101IPR015300DNA-binding pseudobarrel domain
CDDcd100176.72E-10996No hitNo description
PfamPF023622.1E-111094IPR003340B3 DNA binding domain
SMARTSM010197.4E-101099IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-17260363IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-16260364IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-8264362No hitNo description
PROSITE profilePS5086311.716265364IPR003340B3 DNA binding domain
SMARTSM010191.7E-10265364IPR003340B3 DNA binding domain
PfamPF023621.3E-9270352IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGFSNNSLRF FKVFQPQFSS ESLMIPPAFA EKVSGDLPNR VFLKGYKVWL VNVGKIGDRL  60
HFLGGWSKFV SENFIEHGDF MVFEYHSKRC FDVTLLGRNG CQKVQVNGNE KEKQMEVDDG  120
KNDEQIEDVD VDVTMLERNG CIKVPVDSGK EEEEQADVDV DDDDDDDDDD DMYEVGDDDD  180
DEEEDNDDDY DDEFEDGKRN KRKLNKFSSI KKSSASKNNG YIDKDEYDYN DERPPKKSKN  240
VLPKKNGKGE RWKKLMEYLP EKNPFFITGI VKSDYDRDRL HIPTTFMVDS KLKFEDEIVL  300
QDPEGRNWGG NRNLRQNGSV WIQGGWTNLC DANGVTEDDT LICELLPQKG KTRKVIKVQI  360
IRSSTK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.16e-18B3 family protein