PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AHYPO_003989-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 384aa MW: 42964.8 Da PI: 6.6145 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.1 | 7.4e-32 | 245 | 300 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a+++LGG+++AtPk+i+elm v+gLt+++vkSHLQkYRl+ AHYPO_003989-RA 245 KQRRCWSPELHRRFVDALTELGGAQVATPKQIRELMRVDGLTNDEVKSHLQKYRLH 300 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.355 | 242 | 302 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-29 | 243 | 303 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.51E-17 | 243 | 303 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.7E-26 | 245 | 300 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.3E-7 | 247 | 298 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MGLEISLIND PSERSRRFDE FLKRLEDEMK KIKVFKRELP LSMLLLEEAI LHLKQESKQY 60 KTRITHQLVS EEFIPLNKDS IRGENTQSNK TSDEDSGSEM KNWMRSFQLW VDDQPSKSSV 120 TTHMSCNQNQ NNNLSAESKM VDEKRNPIVG SDVFDPSKIR TESKGFVPLV HCYPTTIPDM 180 SRKVENKEDG KATGLSLLVS GMIKHPEENS IFRGFDPKLG GAQNSSSPSA ASGGRSSQQQ 240 ISARKQRRCW SPELHRRFVD ALTELGGAQV ATPKQIRELM RVDGLTNDEV KSHLQKYRLH 300 TRRVPNDSGK KNGQALSNSW SAQDQYSESL IPSNSPSSSP EGPLQFPGLT GGTSTTGGDS 360 MEDDDDEKSE IFSYVHRSGN DDV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-13 | 245 | 298 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-13 | 245 | 298 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-14 | 245 | 298 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-14 | 245 | 298 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-14 | 245 | 298 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-14 | 245 | 298 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-13 | 245 | 298 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-13 | 245 | 298 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-13 | 245 | 298 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-13 | 245 | 298 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-13 | 245 | 298 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-13 | 245 | 298 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010691017.1 | 1e-162 | PREDICTED: myb family transcription factor EFM | ||||
TrEMBL | A0A0K9RTL5 | 1e-154 | A0A0K9RTL5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010691017.1 | 1e-161 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-42 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | AHYPO_003989-RA |