PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_003296-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 369aa    MW: 41729.5 Da    PI: 9.7166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_003296-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.5e-12253335187
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+ v+ p +v k+  + +p k ++++ +   +s++++l+    ++W  +l +y+kk+g+  +t+GWk+F+ +n+L+e D++vF+ + +
  AHYPO_003296-RA 253 FIVVMRPTSVYKRFYMNIPGKWLNTNFQF--QSQKVVLRV-GHNTWLATLaTYDKKGGG--FTSGWKKFALDNNLEEFDVLVFTPVTE 335
                      788999*****************999533..455788776.679999999667999988..89********************96654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.053169IPR003340B3 DNA binding domain
CDDcd100171.14E-8467No hitNo description
SuperFamilySSF1019368.04E-11567IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-10668IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-17247355IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-14249333IPR015300DNA-binding pseudobarrel domain
CDDcd100178.97E-14252331No hitNo description
SMARTSM010192.5E-5253343IPR003340B3 DNA binding domain
PROSITE profilePS508639.615253354IPR003340B3 DNA binding domain
PfamPF023621.9E-10253336IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MQAQLPDKVP LKVPSGAIWE IELLKSVDLR FVGNEWKAFA KANELKEHCI LVFKYQRNLH  60
FEVLIFDEGS SCEKEAAYFI KKGEETKSEP KDKRKRAVKE DSTSEIAESD EEDSSVDVLK  120
KSRSGDGGDV LFGVKLNTPS PRHAPRPALR RRGRPRRVLQ TRKSQSKSTV KSRNEPSEIV  180
PIDLIVRGNG EIFLNNVQSQ KSEAQSDKSL NKIDGSKKVS PTSTVMINPE NVTDQEKQEA  240
LQRAIQKRTE NSFIVVMRPT SVYKRFYMNI PGKWLNTNFQ FQSQKVVLRV GHNTWLATLA  300
TYDKKGGGFT SGWKKFALDN NLEEFDVLVF TPVTEEDEAH RSEDKACVAM NVDIFRVVPT  360
ITPLTPIM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-16B3 family protein