PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001679-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 373aa    MW: 43684.9 Da    PI: 9.0323
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001679-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.4e-19331161199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +++lv+p+kf e+ ++k   + t+tl++++g  sW+vkl    ++++ +l++GW eFv+a  ++ +D+++Fk++g+s+f  +v++f++
  AHYPO_001679-RA  33 DFHSQLVIPRKFSENVKEK--LQETVTLKSPNGtASWQVKL--MAYDDALILKDGWGEFVNAFSIRKNDILIFKYTGKSCF--HVQIFDR 116
                      55678*******9666644..667******99999******..**************************************..*****97 PP
2B338.12.7e-12247341196
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sef 90 
                      f+ ++ ps+v ++  l++p + ++++  +  +++++ l+++d   r+W+ ++i++ ++++  l+ GWk+F  +n L+e D++vFkl ++  + +
  AHYPO_001679-RA 247 FLMIMRPSHVYRKFFLSFPAEWISKYftS-YEKRPVRLRVND---RTWSTRFIICSSRRG-GLGFGWKDFSLENCLEEFDVCVFKLASQghEPT 335
                      667899********************953.445777777666...*******88666655.59**********************874323445 PP

                      ..EEEE CS
               B3  91 elvvkv 96 
                       l v++
  AHYPO_001679-RA 336 ILDVSI 341
                      455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-2121116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-2223116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.7623117IPR003340B3 DNA binding domain
CDDcd100179.00E-1624115No hitNo description
SMARTSM010198.6E-1825117IPR003340B3 DNA binding domain
PfamPF023621.6E-1534116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-14244343IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-16246343No hitNo description
SuperFamilySSF1019362.94E-14246343IPR015300DNA-binding pseudobarrel domain
PfamPF023623.5E-11247336IPR003340B3 DNA binding domain
PROSITE profilePS5086311.35247345IPR003340B3 DNA binding domain
SMARTSM010192.4E-8247345IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEDKCEECEN WAQKMYWKHF KYMHFCQILE GHDFHSQLVI PRKFSENVKE KLQETVTLKS  60
PNGTASWQVK LMAYDDALIL KDGWGEFVNA FSIRKNDILI FKYTGKSCFH VQIFDRHSLC  120
ENETSYFIRK CSHSKSDKTH QDQDPKFVKQ SPDEVMHEYS NDDFESVPPK KYRGDINSTK  180
EKPRLQKPSW TWEPVALPQD GTTKQKLITK EHRTDIVTYM SKRRPVTEEE KNRAYQMAAK  240
ELTEGSFLMI MRPSHVYRKF FLSFPAEWIS KYFTSYEKRP VRLRVNDRTW STRFIICSSR  300
RGGLGFGWKD FSLENCLEEF DVCVFKLASQ GHEPTILDVS IFRVVPEAVK SIRVSPASSK  360
SSSNRLCKLA QP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-58B3 family protein