PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001353-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 278aa    MW: 32438.3 Da    PI: 9.284
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001353-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025111134123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      +kC +C+ksF    +L +H  + H
  AHYPO_001353-RA 111 WKCDYCKKSFYAEKYLDKHFENrH 134
                      58*****************87766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1050.106.2E-498146IPR026939At2g23090-like
PROSITE profilePS501578.933111134IPR007087Zinc finger, C2H2
PROSITE patternPS000280113134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGYRIFFVLL LLCISPSILW IQAFSPSQQA QPQDLSGHTH RRRILQHEEH ANEIHCSRER  60
SRAAWKVIDE YLMPFVEKEK YQISNKCRLH PDNDMFRDQE QHKINADINE WKCDYCKKSF  120
YAEKYLDKHF ENRHYNLLNA TQSNCLADLC GALHCDRVMD LQPRKTKCNP AAAVRNRHLC  180
ESLADTCFPV TGGASASRLH EFFLHQFCES HTCSRGKDPF SRGGKRRTSI FYIVISVLIL  240
MLLALFYAFV YLYHRGLKTS TRDLKRIPHT GRKKKPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021771000.11e-160uncharacterized protein LOC110735150 isoform X1
TrEMBLA0A0K9QQL81e-158A0A0K9QQL8_SPIOL; Uncharacterized protein
STRINGVIT_14s0219g00070.t011e-128(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-102C2H2-like zinc finger protein