PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_001186-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 331aa    MW: 36308.8 Da    PI: 4.396
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_001186-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00062305328123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+ C+ksF +    ++H +  H
  AHYPO_001186-RA 305 FTCSSCNKSFGSEQAVQSHSKAkH 328
                      89*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.3405.2E-4492IPR024057Nucleoplasmin core domain
PROSITE profilePS5015711.365305330IPR007087Zinc finger, C2H2
PROSITE patternPS000280307328IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MMEFWGAEIK NGGSLKVQPG EGKVLHLSQA CLGEIKKDKG NEFVRVFVQI NGQKFVIGML  60
SLERLPHLNL DLVFEDEFEL SHDLKQGSVH FAGYKADDPV SYPFAVFQFN IIFLFHFFPM  120
NLSNDDEELV PIDSLNSGKP EDKDVKPSSS MANSVVRPEK AESKSKVKIV EPGKDAKKNL  180
EDDESDDDDE DDNEDDDDDD DDEDGEGMEI HDAGSEDEDE DEDEDDEEED SGEETPIKVQ  240
VKKRPVGSTS KTPVPEKKAK FSTPQGKAEG KKVSGHVATP HPAKHAGKIP ANADKTNKQT  300
PSKAFTCSSC NKSFGSEQAV QSHSKAKHGG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021764822.11e-122histone deacetylase HDT1-like isoform X1
RefseqXP_021764823.11e-122histone deacetylase HDT1-like isoform X2
STRINGXP_010683882.11e-103(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.24e-29histone deacetylase 3