PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000966-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 743aa    MW: 82006.2 Da    PI: 5.9554
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000966-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19.3e-20606703296
                      EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                      +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv++ngL+egDf+v++  ++ ++
  AHYPO_000966-RA 606 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGIPIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIY--SDvKC 696
                      79*************************999999999*****7778*******99777777777777.********************..56699 PP

                      E..EEEE CS
               B3  90 felvvkv 96 
                      ++++++ 
  AHYPO_000966-RA 697 GKYMIRG 703
                      9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-28600713IPR015300DNA-binding pseudobarrel domain
CDDcd100154.15E-36603704No hitNo description
SuperFamilySSF1019366.93E-23604700IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-20605707IPR003340B3 DNA binding domain
PROSITE profilePS5086310.771605707IPR003340B3 DNA binding domain
PfamPF023626.4E-16606702IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MEIKEKMKDL DLHGGDLDEN KHIISMKNEE EIWFENNQIT NNNNDDHDDH DDILDVTDPS  60
LFYADFPSLP DFPCMSSSSS SSSTPPVAVK PIGVSSTATT SSSASTASSG AASWALLKSD  120
AEHNPSLDHH HQHHQPNDGH GMDEMLLDDV DQCMDMMQNF GCIDNMLENS DICWDPSPLF  180
EENGDEDERV FQQFMQQQGD NDSITNNSNI SGIVDGVGQS SHMNCGGVNG QSEDLAMVFF  240
EWLKTNKEAI SAEDLRNIKI KKSTIENAAK RLGGGKEGMK ELLKLILQWV QNHHLQNKRI  300
MAAAAGSMGE DDVQVMGSSN NNSMLENINN IDNNNNNNLS VSNNDNSSGN GNPSCGIDPC  360
FSPSNTWVVP TPPSQRSFVS DTTTMVPLPC TPTPGGYLPS VGYMGGGDPY SGGNPMAAYP  420
SPMVPQPSDY HTWAPTPIQY GIGLHYGSFP DAAQFGGYTN TPPYPGFYYH PGAGEGLMRM  480
GSSATKEARK KRMARQRRFF THHHRSSHHH QHHLHQNNQN GNSNGGGVNQ HMMINPMVEQ  540
HAGVGNGTMG FPHGSWVYWP PNPSPQMPPP PPMNHMTGPM VGQMMPPQPP LDRGWKTEKN  600
LRFLLQKVLK QSDVGNLGRI VLPKKEAETH LPELEARDGI PIAMEDIGTS RVWNMRYRFW  660
PNNKSRMYLL ENTGDFVRSN GLQEGDFIVI YSDVKCGKYM IRGVKVRPQQ QTTRPETSNK  720
KANKTQKMDG TSSPARNGAM QS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A8e-396017111111B3 domain-containing transcription factor FUS3
6j9b_D8e-396017111111B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0151831e-113AB015183.1 Mesembryanthemum crystallinum McVp1 mRNA for transcription factor Vp1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010684987.10.0PREDICTED: B3 domain-containing transcription factor ABI3 isoform X2
TrEMBLO803940.0O80394_MESCR; Transcription factor Vp1
STRINGXP_010684986.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-86B3 family protein