PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000066-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 293aa    MW: 32005.4 Da    PI: 8.5832
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000066-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05263285223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C++ F+++  L+ H  + H
  AHYPO_000066-RA 263 VCPKCSRGFRDPVALVEHVEKdH 285
                      7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.06E-12850No hitNo description
PROSITE profilePS510397.6641056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.2E-91153IPR000058Zinc finger, AN1-type
SMARTSM001540.0071352IPR000058Zinc finger, AN1-type
PfamPF014285.8E-111350IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.109.6E-1189145IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.63E-893142No hitNo description
PROSITE profilePS510397.75798151IPR000058Zinc finger, AN1-type
SMARTSM001540.22101142IPR000058Zinc finger, AN1-type
PfamPF014283.0E-8101140IPR000058Zinc finger, AN1-type
SMARTSM003550.044224247IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538224252IPR007087Zinc finger, C2H2
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
SMARTSM003556.5262285IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663262290IPR007087Zinc finger, C2H2
PROSITE patternPS000280264285IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGTPVFPNLG KHCSVDDCKQ IDFLPFTCDR CSQVLCLEHR SYKQHRCPHA DHQGVTVVIC  60
PLCAKAVRLI PDEDPNITWE SHVNTVCDPS NYEKVTKKRK CPVVGCKEIL VFSNTVKCKD  120
CNTDHCLKHR FGPDHKCAGP PKASTGFPFM GLLNSSSRNE GPRPNRAPVQ STSSVWSRFL  180
NAASSARASA EAGMTKLSSD FNQVLQAGQG SKSSSSSSGH GGQEVCPQCN MRFLSVTALV  240
QHVEKVHERS NNRPSVRKLS VDVCPKCSRG FRDPVALVEH VEKDHGGTSK AY*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666757.11e-175PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-121SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A0J8B7C51e-174A0A0J8B7C5_BETVU; Uncharacterized protein
STRINGXP_010666757.11e-175(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-116C2H2 family protein