PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

MIKC_MADS

Protein Properties

Length: 146aa MW: 17195.9 Da PI: 9.8997

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AC233912.1_FGP001	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.1	1.7e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvtfskRr g++KKA+E+ +LCda++ viifs +g++yeyss AC233912.1_FGP001 9 KKIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEYSS 59 68***********************************************96 PP
2	K-box	41.8	4.5e-15	85	144	14	73
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 +++ qe++++++e + L+ +++ edL s s+++L +Leqq+e sl k+R +K+ell AC233912.1_FGP001 85 QQKIVQEMTRMNDERNRLRMIMAQYMAEDLASFSVQDLSNLEQQIEFSLYKVRLRKQELL 144 68999*****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.922	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.3E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-29	2	79	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.22E-37	2	76	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-27	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.7E-12	81	144	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	10.372	85	146	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MGRGKVELKK IENPTNRQVT FSKRRMGLFK KANEVAILCD AQIGVIIFSG SGRMYEYSSP 60 PWRIASVFDR YLKAPSTRFE EMDIQQKIVQ EMTRMNDERN RLRMIMAQYM AEDLASFSVQ 120 DLSNLEQQIE FSLYKVRLRK QELLDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_R	1e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
1tqe_S	1e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
6byy_A	1e-16	1	60	1	60	MEF2 CHIMERA
6byy_B	1e-16	1	60	1	60	MEF2 CHIMERA
6byy_C	1e-16	1	60	1	60	MEF2 CHIMERA
6byy_D	1e-16	1	60	1	60	MEF2 CHIMERA
6bz1_A	1e-16	1	60	1	60	MEF2 CHIMERA
6bz1_B	1e-16	1	60	1	60	MEF2 CHIMERA
6bz1_C	1e-16	1	60	1	60	MEF2 CHIMERA
6bz1_D	1e-16	1	60	1	60	MEF2 CHIMERA
6c9l_A	1e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_B	1e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_C	1e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_D	1e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_E	1e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
6c9l_F	1e-16	1	60	1	60	Myocyte-specific enhancer factor 2B
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.12001	0.0	meristem\| pericarp\| root\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	AC233912.1_FG001

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AC233912.1_FGP001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU975425	0.0	EU975425.1 Zea mays clone 490157 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008652193.1	1e-105	MADS-box transcription factor 31
Swissprot	Q84NC2	3e-89	MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBL	A0A1D6HRZ7	1e-100	A0A1D6HRZ7_MAIZE; Protein TRANSPARENT TESTA 16
STRING	AC233912.1_FGP001	1e-104	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1850	37	100
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	2e-41	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	AC233912.1_FGP001
Entrez Gene	103632129

Publications ? help Back to Top
Alexandrov NN, et al. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol., 2009. 69(1-2): p. 179-94 [PMID:18937034] Schilling S, et al. Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa). Plant J., 2015. 84(6): p. 1059-72 [PMID:26473514]