PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC218973.3_FGP003
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 275aa    MW: 29785.4 Da    PI: 4.7215
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC218973.3_FGP003genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.55.2e-34111121100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                        aCaaCk++rr+C++dC lapyfp++++++f+n+h+lFG++n+lk+lk++  ++++r +am+++vye++a+   P +G+v vil+lq++++++
  AC218973.3_FGP003  11 ACAACKYQRRRCTADCELAPYFPQDRAHSFRNAHRLFGVNNMLKTLKRAgtDPDRRAEAMKCVVYESQAWEVCPDSGCVPVILALQKEIQET 102
                        7**********************************************99778888************************************* PP

             DUF260  91 kaelallkee 100
                        +++l ++++e
  AC218973.3_FGP003 103 EHQLRRVRAE 112
                        ****999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.93210113IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-3311110IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MTGPGGGAST ACAACKYQRR RCTADCELAP YFPQDRAHSF RNAHRLFGVN NMLKTLKRAG  60
TDPDRRAEAM KCVVYESQAW EVCPDSGCVP VILALQKEIQ ETEHQLRRVR AELDDSRRRA  120
DAAAAAAMVC PPAKAQCPDS LYGANFPSLC PQPPFSSDGN SIATAPPQQS LPWTTTVQCP  180
LTRQAEHIGL VDDASTAMVD CNRIATAPPP QTLPCTTIQW PTLYAGDNPF FLNNASTTMV  240
PNDDCVTTYL VDEIDNGSEN IGFEEDVSAS SNLPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-1921134111LOB family transfactor Ramosa2.1
5ly0_B7e-1921134111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC218973.3_FG003
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC218973.3_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020406439.10.0LOB domain-containing protein 4
TrEMBLA0A1D6MV270.0A0A1D6MV27_MAIZE; LOB domain-containing protein 27
STRINGAC218973.3_FGP0030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154591316
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-27LOB domain-containing protein 27