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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AC217910.3_FGP006 |
Common Name | LOB4 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
LBD |
Protein Properties |
Length: 419aa MW: 45005.7 Da PI: 4.6627 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
AC217910.3_FGP006 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 123 | 1.6e-38 | 69 | 167 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+lk+l++e dam +l+y++++ra+dPv G+++++l+l++qle a
AC217910.3_FGP006 69 ACAACKYQRRKCSPDCPLAPYFPADQQRRFLNAHRLFGVSNILKTLKKLKPELCADAMGTLIYQSDMRAQDPVGGCYRLVLSLERQLEIDTA 160
7*****************************************************************************************99 PP
DUF260 93 elallke 99
el ++ +
AC217910.3_FGP006 161 ELTAVLH 167
9988765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 419 aa
Download sequence Send
to blast |
MTSTVSASQL HITATATGTS AVITTPSSNQ NPINARSCHH SASSSPRSST TTGGTGGGGG 60 SGSGSTNQAC AACKYQRRKC SPDCPLAPYF PADQQRRFLN AHRLFGVSNI LKTLKKLKPE 120 LCADAMGTLI YQSDMRAQDP VGGCYRLVLS LERQLEIDTA ELTAVLHHLA FCRQATTTTT 180 VMAPQQQGGG MADLDVTSSN QPLLPNEQQE VVDALYVNHE AHTAILQTDE VVHRHGGGHS 240 PTDDHHGEQQ QQQLFDYFYY DATASDDASS KPTIDINLDN MQQFDFDDSC AAAEKVDLAP 300 AAGDGEIRHH QHLDMNCQID HKDYFEIKAA SLVDAFDIRQ DLQPVADVNA EVDIDIKTVD 360 MNAGIGIDMK AMDMNANVDV NADLQGDDAA VNVSTCEAEA AKMAAESSHC RLGLGFSSF
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU963504 | 0.0 | EU963504.1 Zea mays clone 263389 hypothetical protein mRNA, complete cds. |