PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC217264.3_FGP005
Common NameLOC103643621, Zm.100730
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 454aa    MW: 48277.7 Da    PI: 6.8273
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC217264.3_FGP005genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-154390148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+ Ed  l d v+ +G g+W+++ r+ g+ R++k+c++rw ++l
  AC217264.3_FGP005 43 KGPWTASEDAMLMDHVRHHGEGNWNAVQRMTGLLRCGKSCRLRWTNHL 90
                       79******************************99***********996 PP
2Myb_DNA-binding51.13e-1696139146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g+++++E++l++++++qlG++ W++ a++++ gRt++++k++w++
  AC217264.3_FGP005  96 KGSFSPDEELLIAQLHAQLGNK-WARMAAHLP-GRTDNEIKNYWNT 139
                        799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3493890IPR017930Myb domain
SMARTSM007172.9E-134292IPR001005SANT/Myb domain
SuperFamilySSF466891.83E-2842137IPR009057Homeodomain-like
PfamPF002498.1E-144390IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-214497IPR009057Homeodomain-like
CDDcd001671.55E-104590No hitNo description
PROSITE profilePS5129422.71791145IPR017930Myb domain
SMARTSM007171.3E-1495143IPR001005SANT/Myb domain
PfamPF002493.1E-1596139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2498144IPR009057Homeodomain-like
CDDcd001677.28E-1198139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MERSRPGAAP TPSPEEEVAA EGHAHGDDVT GQEEEATPVV LKKGPWTASE DAMLMDHVRH  60
HGEGNWNAVQ RMTGLLRCGK SCRLRWTNHL RPNLKKGSFS PDEELLIAQL HAQLGNKWAR  120
MAAHLPGRTD NEIKNYWNTR TKRRQRAGLP VYPPEVQLHL ALSKRCHYDD YDFPPLASSP  180
QLSATTTTDV QALGAGPGYA SSRPAPLDLA RSQLAATTTQ QTAQFLSPPP FSAPSSPWAK  240
PFARNAQYFQ LAHSSPVSPS TPTGPVHPAM PDLSLGGHGA RAAAAADQSR LPPLSPSPGP  300
RVELPSNQYG QPAPPTSAAA VAAGLALPDH QNAASLEQML QELHDVIKVE PQALVPASGG  360
GAALERHDCG VSVPESRISG LQRRGDDMDT LFGLVHPALG APETAPAAAA SNHSGSTSRH  420
STADQNPSTV GNSSPDQDWG LDGVCQWSNV SRIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-284114425127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC217264.3_FG005
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC217264.3_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425370.0BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds.
GenBankKJ7275320.0KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665006.10.0transcription factor MYB120
TrEMBLA0A317YIZ90.0A0A317YIZ9_MAIZE; Transcription factor MYB101
STRINGAC217264.3_FGP0050.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.18e-66myb domain protein 101