PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC212823.4_FGP003
Common NameLOC103627219
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 389aa    MW: 43181.4 Da    PI: 10.6499
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC212823.4_FGP003genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.95.3e-23213262251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                        ri+n++ rqvtfskR ng+lKK +ELS+LCda++ +ii+sst  lye+s+
  AC212823.4_FGP003 213 RIDNSMSRQVTFSKRWNGLLKKMKELSILCDAKIGLIIISSTSMLYEFSN 262
                        8***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.510.101.5E-7109162No hitNo description
SuperFamilySSF561121.89E-8109164IPR011009Protein kinase-like domain
SMARTSM004322.0E-24204263IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.936204264IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-21206226IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-20207264IPR002100Transcription factor, MADS-box
PfamPF003191.2E-19213260IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-21226241IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-21241262IPR002100Transcription factor, MADS-box
PfamPF003682.6E-7258304IPR002202Hydroxymethylglutaryl-CoA reductase, class I/II
SuperFamilySSF550354.58E-10263305IPR009023Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain
Gene3DG3DSA:3.30.70.4201.5E-12263306IPR009023Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain
PROSITE profilePS500659.71264306IPR002202Hydroxymethylglutaryl-CoA reductase, class I/II
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015936Biological Processcoenzyme A metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004420Molecular Functionhydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0046983Molecular Functionprotein dimerization activity
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAASSSSNSS PIGCLHPTLI FMRGTIVPNP MTPRSADSSC THDLHPKRKD RLVERAPYAR  60
PVVPRGGARE EDGQAGLGLG LLARARQHGL HLLPHRTQSP LARSPFNLQA LILMYQLCNS  120
VAFVHDPKVL HRELKLHILL KDHKTMVLKI ADLSLSHAIS SSWPRAPSRT LPPLSAWRSP  180
LPTTATPHDC ELVKSIKRHR VLFDEEGKIV VRRIDNSMSR QVTFSKRWNG LLKKMKELSI  240
LCDAKIGLII ISSTSMLYEF SNTKSSRFGR LQGVKRAIAG RNLYKRCSCS CSTGDAMGMN  300
MISKDVLFVR VGGSGEQGSK GEVACYIRLR HVWWRRAAGL GFVGNTLVEG DYLFVPSKCQ  360
GGIQRVHIIK GCVDGSLLLK ILQEMEKEQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.873046e-39ear| embryo| endosperm| meristem| ovary| pollen| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC212823.4_FG003
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC212823.4_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425101e-36BT042510.1 Zea mays full-length cDNA clone ZM_BFb0310C21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6H9I50.0A0A1D6H9I5_MAIZE; Uncharacterized protein
STRINGAC212823.4_FGP0030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.11e-21AGAMOUS-like 44