PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC203865.3_FGP001
Common NameLOC100217281
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CPP
Protein Properties Length: 394aa    MW: 42460 Da    PI: 6.9633
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC203865.3_FGP001genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.12.1e-1477114340
                TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        +k C+Ckks+Clk+YC C+a+g++C+e C Ce C+Nk 
  AC203865.3_FGP001  77 CKACSCKKSRCLKLYCVCYASGSHCTELCGCEPCHNKP 114
                        799*********************************96 PP
2TCR47.34e-15153188439
                TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        ++C+Ckks ClkkYC+C++ g+ Cs +CkC+dC+N 
  AC203865.3_FGP001 153 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCRNP 188
                        79********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.0E-975116IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163425.84876190IPR005172CRC domain
PfamPF036382.0E-1078113IPR005172CRC domain
SMARTSM011148.3E-15150191IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.1E-11153187IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDADVGAGAT NQPWPEPDDA HLSPPPPPPP PPASAPTPAA EAAAPTASAA VSPPAPAEAN  60
GNSDRKRRRK ADDGDGCKAC SCKKSRCLKL YCVCYASGSH CTELCGCEPC HNKPPQGAPW  120
TAPVLPLKPV QTLEAGQEIV EQLIRSPMDL IRRKCTCKKS GCLKKYCDCY QGGAGCSINC  180
KCDDCRNPFG RKVGVILDGK SSGLPAPVHV HERNGTEADS SGDDEEDDDL YMNRQLSPSP  240
VSRESSFQQE TLVGVEVQTM NGHLYPKPLT QVRPEPSSWQ LSAARRPAEE PRGEVWRFSG  300
RPGEDGASDA VEAARAVAVA PPRESRRPGT RGGDRLRFSI PRCVEAMSAM AELSPVEKSL  360
APDVFLDESN REIFLSLSVD VRPIWLRRKM KSLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16468RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.984220.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC203865.3_FG001
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC203865.3_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0382650.0BT038265.1 Zea mays full-length cDNA clone ZM_BFb0221N17 mRNA, complete cds.
GenBankBT0433160.0BT043316.1 Zea mays full-length cDNA clone ZM_BFc0156F11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001137104.10.0uncharacterized protein LOC100217281
TrEMBLB4FMC70.0B4FMC7_MAIZE; Protein tesmin/TSO1-like CXC 4
STRINGAC203865.3_FGP0010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP96102834
Representative plantOGRP1307345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-31TESMIN/TSO1-like CXC 2