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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AC200057.4_FGP007 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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| Family |
bZIP |
| Protein Properties |
Length: 379aa MW: 40385.9 Da PI: 6.7509 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| AC200057.4_FGP007 | genome | MaizeSequence | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 28.7 | 2.9e-09 | 200 | 250 | 13 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
NR +A rs +RK +i eLe+kv++L++e ++L +l l+ l++e+
AC200057.4_FGP007 200 NRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTLLQRDTTGLTTEN 250
*************************************99998877777666 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MPGDGDPSDG LPPQSTRRAG APPSSSTPPR EYDISRMPDF PTRSTGHRRA HSEILGLPDD 60
LDLSAPGGGD GPSLSDENDE ELFSMFLDVD KLNSSCGASS EAEAESSSVA DGVGEGAELG 120
HAPRPRHQHS QSMDESMSIK AEQLVGAPGM EGMSSAEAKK AVSAAKLAEL ALVDPKRAKR 180
VVGGLSKTPP RSAPGWIWAN RQSAARSKER KMRYISELER KVQTLQTEAT TLSAQLTLLQ 240
RDTTGLTTEN SELKIRLQTM EQQVHLQDAL NDTLKAEVQR LKVATGQGPA NGGGGMMMNF 300
GAVPRAFGGG NQQTFHSSQS QAMQSMLATH QLQQLQLHSQ PQQQLQAQHL QQVARDLKMK 360
GHLGAQGQWG GGKSGSSGS
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed at high levels in levels in leaf sheath, moderate levels in leaf blade, but not in roots. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:11390974, ECO:0000269|PubMed:12855676, ECO:0000269|PubMed:14704272, ECO:0000269|PubMed:9311985}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Dai S,Zhang Z,Bick J,Beachy RN
Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
[PMID:16476995] - Liu Y,Dai S,Beachy RN
Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
Biochem. J., 2007. 405(2): p. 243-9
[PMID:17371296] - Dai S, et al.
Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
[PMID:19104064] - Ordiz MI,Yang J,Barbazuk WB,Beachy RN
Functional analysis of the activation domain of RF2a, a rice transcription factor.
Plant Biotechnol. J., 2010. 8(7): p. 835-44
[PMID:20408988]
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