PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AC185655.3_FGP005
Common NameLOC103648579
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 505aa    MW: 54467.8 Da    PI: 6.5624
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AC185655.3_FGP005genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05347369123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp C+ksFs++  L  H+ +H
  AC185655.3_FGP005 347 HTCPTCSKSFSTHQALGGHMASH 369
                        79******************999 PP
2zf-C2H210.70.0016442464123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC  C+++Fs+   L  H r+H
  AC185655.3_FGP005 442 HKCDECSQTFSSGQALGGHKRKH 464
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0126688IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-66790IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-4345372IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.83E-9345369No hitNo description
SMARTSM003550.006347369IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741347374IPR007087Zinc finger, C2H2
PfamPF139121.3E-8347369IPR007087Zinc finger, C2H2
PROSITE patternPS000280349369IPR007087Zinc finger, C2H2
SuperFamilySSF576672.83E-9437464No hitNo description
PROSITE profilePS5015710.076442464IPR007087Zinc finger, C2H2
SMARTSM003550.071442464IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-10442465IPR007087Zinc finger, C2H2
PROSITE patternPS000280444464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MNSQLQLQAY EAAGAVRVHP AEDGQTEATP QAPLRKIQGQ GTADDLPRRQ GSGLAPSMGT  60
TGNTYAKCPE CHKWFTSLKA MFGHLRKHPD RGYKGATRPT PATISAAAAV AGDNEPTKKV  120
PRKESVFLAL NMADEEKKPW EEAGTKWPAK AKRRRTPVAP MQATSCSEEE QEEAATGMEE  180
EEEEEEEKEA AMILLEMSRT SSETQQQQPA QEPVHAPDAV SGHQIQTSDV EELMLQHQPA  240
GQQIPEAAQI VQLENALELI SAESQTPAAK QVTELVITTE TVLTIMVPAN KAIFPSLGSG  300
AGDKKAKKRR VNSEQTVASM SPPPPPEGTV RTPPARRIPS PASGKKHTCP TCSKSFSTHQ  360
ALGGHMASHV KNKTTSARHD DLAAAQAMDK RNILAHRDQS ASNGDVIIPA SAGAGKGALH  420
ERQDAQPPPA RAPTPQTSAL QHKCDECSQT FSSGQALGGH KRKHWFLEKQ QARAALPAPV  480
LEPESRDFDL NELPKEGQDE DNNQP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAC185655.3_FG005
Cis-element ? help Back to Top
SourceLink
PlantRegMapAC185655.3_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008671251.10.0uncharacterized protein LOC103648579
TrEMBLA0A1D6E8Q60.0A0A1D6E8Q6_MAIZE; OSJNBa0089K21.8-like protein
STRINGAC185655.3_FGP0050.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Representative plantOGRP1097248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.19e-13C2H2 family protein