PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC185655.3_FGP005 | ||||||||
Common Name | LOC103648579 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 505aa MW: 54467.8 Da PI: 6.5624 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.2e-05 | 347 | 369 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+ksFs++ L H+ +H AC185655.3_FGP005 347 HTCPTCSKSFSTHQALGGHMASH 369 79******************999 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 442 | 464 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+++Fs+ L H r+H AC185655.3_FGP005 442 HKCDECSQTFSSGQALGGHKRKH 464 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.012 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.2E-6 | 67 | 90 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 345 | 372 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.83E-9 | 345 | 369 | No hit | No description |
SMART | SM00355 | 0.006 | 347 | 369 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.741 | 347 | 374 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-8 | 347 | 369 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 349 | 369 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.83E-9 | 437 | 464 | No hit | No description |
PROSITE profile | PS50157 | 10.076 | 442 | 464 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.071 | 442 | 464 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.8E-10 | 442 | 465 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 444 | 464 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MNSQLQLQAY EAAGAVRVHP AEDGQTEATP QAPLRKIQGQ GTADDLPRRQ GSGLAPSMGT 60 TGNTYAKCPE CHKWFTSLKA MFGHLRKHPD RGYKGATRPT PATISAAAAV AGDNEPTKKV 120 PRKESVFLAL NMADEEKKPW EEAGTKWPAK AKRRRTPVAP MQATSCSEEE QEEAATGMEE 180 EEEEEEEKEA AMILLEMSRT SSETQQQQPA QEPVHAPDAV SGHQIQTSDV EELMLQHQPA 240 GQQIPEAAQI VQLENALELI SAESQTPAAK QVTELVITTE TVLTIMVPAN KAIFPSLGSG 300 AGDKKAKKRR VNSEQTVASM SPPPPPEGTV RTPPARRIPS PASGKKHTCP TCSKSFSTHQ 360 ALGGHMASHV KNKTTSARHD DLAAAQAMDK RNILAHRDQS ASNGDVIIPA SAGAGKGALH 420 ERQDAQPPPA RAPTPQTSAL QHKCDECSQT FSSGQALGGH KRKHWFLEKQ QARAALPAPV 480 LEPESRDFDL NELPKEGQDE DNNQP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC185655.3_FG005 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC185655.3_FGP005 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008671251.1 | 0.0 | uncharacterized protein LOC103648579 | ||||
TrEMBL | A0A1D6E8Q6 | 0.0 | A0A1D6E8Q6_MAIZE; OSJNBa0089K21.8-like protein | ||||
STRING | AC185655.3_FGP005 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14400 | 14 | 25 | Representative plant | OGRP10972 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 9e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | AC185655.3_FGP005 |
Entrez Gene | 103648579 |