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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AC185655.3_FGP004 |
| Common Name | LOC103648578 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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| Family |
C2H2 |
| Protein Properties |
Length: 472aa MW: 50227.3 Da PI: 6.9005 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| AC185655.3_FGP004 | genome | MaizeSequence | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.4 | 1.2e-05 | 310 | 332 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++Cp C+ksFs++ L H+ +H
AC185655.3_FGP004 310 HTCPTCPKSFSTHQALGGHMASH 332
79******************999 PP
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| 2 | zf-C2H2 | 13.4 | 0.00023 | 407 | 429 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC C+ksFs+ L H r+H
AC185655.3_FGP004 407 HKCDECTKSFSSGQALGGHKRKH 429
79*******************99 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00355 | 0.0068 | 57 | 79 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 4.7E-6 | 57 | 81 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 59 | 79 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 308 | 335 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 6.05E-9 | 308 | 332 | No hit | No description |
| SMART | SM00355 | 0.0044 | 310 | 332 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.408 | 310 | 337 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 8.4E-8 | 310 | 332 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 312 | 332 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 6.05E-9 | 402 | 429 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 3.2E-5 | 406 | 429 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.048 | 407 | 429 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 5.6E-12 | 407 | 431 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 10.45 | 407 | 434 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 409 | 429 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 472 aa
Download sequence Send
to blast |
MNSRALQLQL QAAAAAAPVH AGEDGEPEAT PKAPLLKIQG QGSGLARSMG TTTGNATKCP 60
ECPKWFPSLK AMCGHLRQHP DRDYRGATRP TPATISAAAA VSVAVAGDNE PTNKVPRKES 120
VVVAINMVAA AATAVQKQPW EEAETQWPAK AKRGRTHVAP MQASSISEEE EAAMEEEAAM 180
ILLEMSRTSS ETQRQQQPVE PVRSPYAVSG HQIQTTSVVE ELMQQQTPEN ALELSAESQT 240
SVAKHVTDLV EAVLIMVPAN KAIFPSLNSG AGDKKPKKRW VRNPVHTAAS TTSPPPPEGA 300
VRTPPAGKMH TCPTCPKSFS THQALGGHMA SHVKNKTTSA RHDDHAAAHA VIKPDVLAHS 360
DQSAGNGDVD IIPASSGAGK GGALQERQDA QPPPARAPTP PQTSAPHKCD ECTKSFSSGQ 420
ALGGHKRKHW SLEKQQARAA LFAPVIEPEP ELRDFDLNEL PKEEQDEDNN QP
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