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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AC183950.2_FGP002 | ||||||||
Common Name | LOC103637498, ZEAMMB73_097979 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 138aa MW: 15118.9 Da PI: 7.8087 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.0004 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F + L H +H AC183950.2_FGP002 56 YKCSLCDKVFASYQALGGHKTSH 78 9**********999998888777 PP | |||||||
2 | zf-C2H2 | 14.9 | 7.5e-05 | 103 | 123 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ C+++Fs + L +Hi+ AC183950.2_FGP002 103 HQCSLCPRTFSWWQALGSHIQ 123 79*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 29 | No hit | No description |
Pfam | PF13912 | 2.2E-13 | 56 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.118 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0095 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.9E-10 | 56 | 122 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.01 | 103 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 19 | 103 | 123 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MALTKPPTAT DDDQAERKYL TSCLIMLSCG LRDGDMANAT REAGATPTSA NMADDYKCSL 60 CDKVFASYQA LGGHKTSHRK PAAAPSDEAS SSGTAYEKEE KLHQCSLCPR TFSWWQALGS 120 HIQGSQFRKE KLFGTYRN |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AC183950.2_FG002 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AC183950.2_FGP002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657892.1 | 1e-100 | zinc finger protein AZF1 | ||||
TrEMBL | K7VA36 | 4e-99 | K7VA36_MAIZE; Zinc finger protein AZF1 | ||||
STRING | AC183950.2_FGP002 | 1e-100 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 2e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | AC183950.2_FGP002 |
Entrez Gene | 103637498 |