PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA9G00123
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bZIP
Protein Properties Length: 424aa    MW: 45240.8 Da    PI: 6.9166
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA9G00123genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.51.2e-22313375163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                ++elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L +eN++L+ e+++lk ++++l +++
  AA9G00123 313 DRELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNEENTSLRAEINKLKSQCEELSAQN 375
                689********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.4E-281102IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.0E-34141282No hitNo description
Gene3DG3DSA:1.20.5.1705.3E-18306374No hitNo description
SMARTSM003385.7E-20313377IPR004827Basic-leucine zipper domain
PfamPF001702.1E-20314375IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.139315378IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-11316372No hitNo description
CDDcd147022.04E-23318368No hitNo description
PROSITE patternPS000360320335IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MASSKMEKSG KEKEPKTPPS SSSAPPSSQE PSSAVSAGMA TPDWSGFQAY SPMAPHGFVA  60
SSPQPHPYMW GVQHMMPPYG TPPHPYVAMY PPGGMYGHPS LPPGSYPFNP YAMTSPNGMT  120
EASGNTTGNT EADAKQSDAK EKLPIKRSKG SLGSLNMIIG KKNEHGKNSG ASANGAYSKR  180
HDTTDYVHKN LFSIGESASD GSSEGSDGNS QNDSGSRQDR KDAEAASDNS GCAHGTRNGS  240
VGTPLLPVNQ TMSITPAGVP SPPTNLNIGM DYWGAPVSSA IPGMQGKVST QVPGVIVPAS  300
RDGGHSQLWL QDDRELKRQR RKQSNRESAR RSRLRKQAEC DELAQRAEVL NEENTSLRAE  360
INKLKSQCEE LSAQNNSLKD QLVSLPLLEA PTNMDKNGEG EETETVGRHD QTGVAETKAD  420
SYKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329335RRSRLRK
2329336RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA9G00123
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884547.10.0bZIP transcription factor 16
RefseqXP_020884548.10.0bZIP transcription factor 16
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLV4M7990.0V4M799_EUTSA; Uncharacterized protein
STRINGBostr.23794s0549.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.10.0basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]