![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA93G00176 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 238aa MW: 26375.7 Da PI: 9.0296 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 73.2 | 4.5e-23 | 109 | 214 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt+++v++Li a+ +++++ + + +kk++W++vsk+m e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ AA93G00176 109 KWTDSMVRLLIMAVFYIGDEAGVSDtidasstkrkscgnnggmlQKKGKWKSVSKAMVEKGFCVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQ 207 7**************88888876544555667777889999999**********************************************559999999 PP trihelix 80 pyfdqle 86 ++++++ AA93G00176 208 GLLESMD 214 9999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.3E-20 | 107 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:1900037 | Biological Process | regulation of cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MESNGLSSVM FSGFSPRMLS LEIPETPQNQ VQFQHQHPCA TGNPVTGAGE RQQHHQTQPV 60 YTYSSSKPKQ LSPLSDDDDR GSGSGSGCNP EDITGTDGKK KFSQWQRMKW TDSMVRLLIM 120 AVFYIGDEAG VSDTIDASST KRKSCGNNGG MLQKKGKWKS VSKAMVEKGF CVSPQQCEDK 180 FNDLNKRYKR VNDILGKGTA CRVVENQGLL ESMDLSAKLK DELRPWQSRS NRATTITI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA93G00176 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407612.1 | 1e-100 | uncharacterized protein LOC18023903 | ||||
TrEMBL | V4LF26 | 3e-99 | V4LF26_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407612.1 | 1e-100 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6762 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10040.1 | 7e-81 | sequence-specific DNA binding transcription factors |